PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S11913.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 455aa MW: 50212.4 Da PI: 9.236

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S11913.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.7e-10	206	247	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Jcr4S11913.10 206 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 247 6889*************************9877777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-6	202	266	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	205	249	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.9E-8	206	248	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-7	207	250	No hit	No description
CDD	cd14708	9.95E-24	207	259	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.5E-8	208	251	No hit	No description
PROSITE pattern	PS00036	0	210	225	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-10	283	308	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MASHGIGGTG LSDSGPSNHH HHLSYATLHG INTPSTSFMY ACWLKLLNFN QEGSAFDXXX 60 XXXXXXQGVK LRNDEAKAPF FTVTGRPAAT LEMFPSWPMR FQQTTPRVVG SSKSGGESTD 120 SGSAVNTLSS KAEAQLDPES PVSKKASSSD HQAFDQKHLQ FQQQQIEMAS DTSRTGGGPP 180 SELNPSSAKP PQEKRKGSTS EKHLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL 240 TQLEQDLQRA RQQGLFLGGC GGAVGNISSG CGCKIXXXXX XXXWSTPAER CFLWMGGFKP 300 SELIKMLTSQ LDPLTEQQIM GIYSLQQSSQ QAEEALFQGL EQLQQSLVDT IASGPVIDGM 360 QQMAVALGKL ANLEGFVRQA DNLRQQTLHQ LRRILTVRQA ARCFLVIGEY YGRLRALSSL 420 WASRPRESMM GDENSCQTTS DLQMVQPPQN HFTNF

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MASHGIGGTG LSDSGPSNHH HHLSYATLHG INTPSTSFMY ACWLKLLNFN QEGSAFDXXX  60
XXXXXXQGVK LRNDEAKAPF FTVTGRPAAT LEMFPSWPMR FQQTTPRVVG SSKSGGESTD  120
SGSAVNTLSS KAEAQLDPES PVSKKASSSD HQAFDQKHLQ FQQQQIEMAS DTSRTGGGPP  180
SELNPSSAKP PQEKRKGSTS EKHLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL  240
TQLEQDLQRA RQQGLFLGGC GGAVGNISSG CGCKIXXXXX XXXWSTPAER CFLWMGGFKP  300
SELIKMLTSQ LDPLTEQQIM GIYSLQQSSQ QAEEALFQGL EQLQQSLVDT IASGPVIDGM  360
QQMAVALGKL ANLEGFVRQA DNLRQQTLHQ LRRILTVRQA ARCFLVIGEY YGRLRALSSL  420
WASRPRESMM GDENSCQTTS DLQMVQPPQN HFTNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU664731	1e-101	EU664731.1 Jatropha curcas microsatellite JATR124 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464905.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	4e-99	TGA9_ARATH; Transcription factor TGA9
TrEMBL	B9SCS7	0.0	B9SCS7_RICCO; DNA binding protein, putative
STRING	XP_002523796.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	7e-94	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]