PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S11886.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HSF | ||||||||
Protein Properties | Length: 720aa MW: 81021.9 Da PI: 6.0834 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 90.9 | 1.5e-28 | 26 | 164 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT....................... CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks....................... 74 Fl k+y++++d++++e++sws+++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+Y + + + Jcr4S11886.30 26 FLLKTYDMVDDSSTDEIVSWSSSKNSFVVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYWRRGGEMVVIYMIEesrafyakidckslldlhlsstc 121 9**********************************************************5443333332222244589999*************99 PP ................XTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 ................kekiweFkhksFkkgkkellekikrkk 101 +++ weF+++ F k++k+ll++i+r+k Jcr4S11886.30 122 dglldscslilgfrkiDPEKWEFANEDFVKDQKHLLKNIHRRK 164 999999988887765449***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.8E-45 | 22 | 163 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.35E-22 | 22 | 85 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.5E-33 | 22 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.3E-27 | 26 | 163 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-13 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-13 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-13 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.5E-33 | 133 | 163 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF05498 | 4.9E-27 | 658 | 719 | IPR008801 | Rapid ALkalinization Factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MEAAPPSATN SGCVGGGGGG GGPAPFLLKT YDMVDDSSTD EIVSWSSSKN SFVVWNPPEF 60 ARVLLPTYFK HNNFSSFIRQ LNTYWRRGGE MVVIYMIEES RAFYAKIDCK SLLDLHLSST 120 CDGLLDSCSL ILGFRKIDPE KWEFANEDFV KDQKHLLKNI HRRKPIHSHS HPHGSLVDPE 180 RAAFDVEIDR LAREKATLEE SVVGSKHQRS AEKLQLEDLT QRVNSMEQRQ EKLLALLEKA 240 VQNPTFIEHL ARKIDSMDFS AYSKKRRLPQ VDHSKSNAEN SFVDNQSNSR SEFGNVIHQD 300 FSNKLRLELS PAVSDINLVS NSTQSSNEDM GSPQRKASGG DPKDTPPRTP CLLFASETFD 360 LSDTGTSYSY KVDPAFPRKL TTNKTLELHS LQPNMISNEE ADGHISCHLN LTLASSPLQA 420 NRSPYSARMA ELHQEFCKSP ESKLNDDGKE SNMLVTSKDR TGGNGDTTLS SSKEAPNNNQ 480 GPAAAPPRVN DVFWEQFLTE RPGSSENEEA SSNYRANPYD DKEDRRSSHW LLLLFISYGL 540 SLLSNDYIHF DVEEEDYVGI WYIFNNERVQ PVEAKVESAI SIGVSLPVPE LLKKLKKRKT 600 TQLYTTQPKK MSRTELYILA LIFLHTHFAI CNGVSVSGLN SLENTEIDAV MRRVDWLEEA 660 EMESEISRRV LLMQKYISYE TLKRDMVPCA KPGASYYDCH AGEANPYSRG CEVITRCRGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-15 | 7 | 163 | 1 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-15 | 7 | 163 | 1 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-15 | 7 | 163 | 1 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 592 | 598 | KKLKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012071084.1 | 0.0 | heat stress transcription factor A-5 | ||||
Refseq | XP_020534588.1 | 0.0 | heat stress transcription factor A-5 | ||||
TrEMBL | A0A067L5F4 | 0.0 | A0A067L5F4_JATCU; Uncharacterized protein | ||||
STRING | XP_002522803.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4961 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-152 | HSF family protein |