PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S11849.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 18006.8 Da PI: 10.0154 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.4 | 1.6e-40 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCa+Ck++rrkC+k+C+lapyfpa+q+++f+n+++lFG++n+lk+lk+++++e++++m+s++ye+++rar Pv+G++g+il+lq q eq+k+++ + Jcr4S11849.10 14 ACAVCKYQRRKCTKECALAPYFPADQQRTFRNARRLFGVHNILKILKQVKDDEKDETMRSIIYESNMRARFPVHGCLGIILHLQYQAEQVKQQILH 109 7********************************************************************************************998 PP DUF260 97 lkee 100 +k++ Jcr4S11849.10 110 AKRQ 113 8877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.839 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-37 | 14 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence Send to blast |
MMKKEDTIPK TSQACAVCKY QRRKCTKECA LAPYFPADQQ RTFRNARRLF GVHNILKILK 60 QVKDDEKDET MRSIIYESNM RARFPVHGCL GIILHLQYQA EQVKQQILHA KRQIEICKKH 120 QCDGFVNSDG IGTRTGIGTA KGKKSDDIVE PRRNQE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-23 | 6 | 114 | 3 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-23 | 6 | 114 | 3 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020538028.1 | 1e-111 | LOB domain-containing protein 25-like | ||||
TrEMBL | A0A1Q3DC13 | 1e-46 | A0A1Q3DC13_CEPFO; DUF260 domain-containing protein (Fragment) | ||||
STRING | XP_008459693.1 | 5e-48 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-34 | LOB domain-containing protein 27 |