PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S11776.10

Common Name

JCGZ_15863, LOC105630681

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 365aa MW: 40586.7 Da PI: 4.5255

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S11776.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	312	351	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r R +ri++ ++ L++l+P ++K + +L +A++Y+ksL Jcr4S11776.10 312 RIRKERIRETISILQSLIPGG----KGKDT-TVVLDEAINYLKSL 351 88999************97....35544.679*******99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.448	302	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0099	308	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-7	312	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.05E-5	312	352	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-5	312	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MGEDWVSWFP QQQFDWQMLN LNHLGAPFNL GQQYSIPSLV NSGTDMVSIN GTLPVYPYPE 60 QPHSHVGQAN ESHGWFYRVP RFQQAFAPTL HSGLKEKLST APCDNHTEAI MPKVESGCAQ 120 KRFLVFDQSG DQTTLVFSSG IGSPVQCFSS WGPNPTGLYN LKREDPGTKE NLNIHLGSIA 180 DDHFDENNDT DLHSEMHEDT EELNALLYSD DDSDSTKDDE VTSTGHSPST MTTHCRQDWF 240 EGSTEEVASS DGSTKKRKLF IEGYSDAPAL MDTATSKKSI TSFEHEDDAE SRCDGDMNWA 300 SGEMGYESSN KRIRKERIRE TISILQSLIP GGKGKDTTVV LDEAINYLKS LKLKAKALGL 360 DVLCD

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MGEDWVSWFP QQQFDWQMLN LNHLGAPFNL GQQYSIPSLV NSGTDMVSIN GTLPVYPYPE  60
QPHSHVGQAN ESHGWFYRVP RFQQAFAPTL HSGLKEKLST APCDNHTEAI MPKVESGCAQ  120
KRFLVFDQSG DQTTLVFSSG IGSPVQCFSS WGPNPTGLYN LKREDPGTKE NLNIHLGSIA  180
DDHFDENNDT DLHSEMHEDT EELNALLYSD DDSDSTKDDE VTSTGHSPST MTTHCRQDWF  240
EGSTEEVASS DGSTKKRKLF IEGYSDAPAL MDTATSKKSI TSFEHEDDAE SRCDGDMNWA  300
SGEMGYESSN KRIRKERIRE TISILQSLIP GGKGKDTTVV LDEAINYLKS LKLKAKALGL  360
DVLCD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067965.1	0.0	transcription factor bHLH145
TrEMBL	A0A067KZ24	0.0	A0A067KZ24_JATCU; Uncharacterized protein
STRING	cassava4.1_027602m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8219	4	6

Link Out ? help Back to Top
Entrez Gene	105630681

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]