PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S11691.20 | ||||||||
Common Name | JCGZ_20854, LOC105628387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | FAR1 | ||||||||
Protein Properties | Length: 250aa MW: 28643.4 Da PI: 5.2419 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.7 | 1.4e-26 | 82 | 172 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAk++GF++r+++ ++s +n e++ r+fvCs+eg+r+ ++ +++ +r+ tr gCka++++ ++ gkw+vtk++ eHnH+l+ Jcr4S11691.20 82 DFYYDYAKQIGFTIRTNRIRHSLKNMEVIGRDFVCSREGFRAAKHALrKDRVLPPRPITREGCKAMIRLAARDGGKWVVTKFVREHNHKLM 172 6*****************************************9998823333449**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.5E-24 | 82 | 172 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MASTVDRHDC LDSDEISDDG TLEVGEECED VEDGLLPNCN SHNVVNNTMI LTEPSIENLS 60 ANSLDLEPST GMTFPSLDDA RDFYYDYAKQ IGFTIRTNRI RHSLKNMEVI GRDFVCSREG 120 FRAAKHALRK DRVLPPRPIT REGCKAMIRL AARDGGKWVV TKFVREHNHK LMTHCKIPGE 180 LPTINILNEE EKDKKIKDLY DELQHERQRS AVIQQELHMI LKDLQEHADF MSTRVQDIIN 240 SLKEIELGNL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012065171.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A067LHZ6 | 0.0 | A0A067LHZ6_JATCU; Uncharacterized protein | ||||
STRING | XP_002533358.1 | 1e-139 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15728 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 5e-41 | FAR1 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105628387 |
Publications ? help Back to Top | |||
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