PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11652.10
Common NameJCGZ_07780, LOC105638265
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 971aa    MW: 107188 Da    PI: 4.842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11652.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding408.9e-13139948
                     HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     de+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
    Jcr4S11652.10  1 DEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 39
                     89*********************9.************986 PP
2Myb_DNA-binding667.1e-214591148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l
    Jcr4S11652.10 45 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 91
                     79******************************.*************97 PP
3Myb_DNA-binding46.68.1e-1597139145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT++E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
    Jcr4S11652.10  97 KEAWTQQEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 139
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002494.7E-10139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-20151IPR009057Homeodomain-like
SuperFamilySSF466898.61E-13156IPR009057Homeodomain-like
SMARTSM007178.8E-5141IPR001005SANT/Myb domain
CDDcd001671.34E-9139No hitNo description
PROSITE profilePS5129415.387139IPR017930Myb domain
PROSITE profilePS5129433.9034095IPR017930Myb domain
SuperFamilySSF466892.02E-3142138IPR009057Homeodomain-like
SMARTSM007176.5E-204493IPR001005SANT/Myb domain
PfamPF002492.6E-194591IPR001005SANT/Myb domain
CDDcd001671.74E-174791No hitNo description
Gene3DG3DSA:1.10.10.606.9E-295294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-2195146IPR009057Homeodomain-like
SMARTSM007178.6E-1596144IPR001005SANT/Myb domain
PROSITE profilePS5129418.72796146IPR017930Myb domain
PfamPF002495.9E-1397140IPR001005SANT/Myb domain
CDDcd001672.35E-1199139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 971 aa     Download sequence    Send to blast
DEILRKAVQR FKGKNWKKIA ECFKDRTDVQ CLHRWQKVLN PELVKGPWSK EEDEIIIELV  60
NKYGPKKWST IAQHLPGRIG KQCRERWHNH LNPSINKEAW TQQEELALIR AHQIYGNRWA  120
ELTKFLPGRT DNAIKNHWNS SVKKKLDSYL ASGLLEQFQG VPLVPHQNQT MPSSMVQSSG  180
DDSAPKCGTE TEEISECSQE SILAGCSQSA GGLGNAVLRE EFQLTEESGL GKERSSSPPS  240
CSEQYFTSVG DVTFSIPDIP CDYQLNLQDL PHMSPLELGQ ESTGFPTNCI AANESHELVN  300
VPTSMGNIAA TSTKAEHMLI SDEECCRFLF SEAMNGGIFS SGSFTKGSNS VACIDSLNCQ  360
SSDIQMSQID RTSQSNTSLK SGVLPTSSSQ SFPSGPSLLS ADDSTLICGR EPNQFMGHSF  420
AGHEQEFITS QHDGFVYTNG SDSHPCDNGT DTTDMQEQHY MKEPSKLVSV NTFDSGSNTL  480
QSCHVNEILN EQREQQDGAL CYEPPRFPSL DIPFLSCDLI QSGSDMQQEY SPLGIRQLMM  540
SSMNCSTPFR LWDSPSRDDS PDAVLKSAAK TFTGTPSILK KRNRDLLSPL SDRRIEKKLE  600
VDMASSLTKE FSRLDVIFAE KETQSATLLS PSSNQKRNHG SSYEDKENVD PAFEGRQEKG  660
RDCSAFEDNQ ISEKNCHSSN SQDNMEQCAV DADAKDKVHA DASAQIVEQP SVILLEDSIS  720
DLLFSPDGFK SDKAFAPSSR TPKNLYRRIL GTLSEQCIAS ESSSGNSCIL VCSPTISKKN  780
HESHLIAATT SVQSLPSSAP SECTSNNNAK DAATENLSIF GETPFKWSIE SPSAWKSPWF  840
INSFLPGPRV DTDISIEDIG YFMSPGDRSY DALGLMRQLS EQTAPAYADA LEVLGNETPE  900
TILEKRRSYK DQENNGAQKN QPENHSHLAL TECRTLDFSE CETPGKGTER GKSSSAMSFS  960
SPSSYLLKGC R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-66114614159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-66114614159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346430.0KM034643.1 Jatropha curcas clone JcMYB023 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077444.10.0transcription factor MYB3R-1
TrEMBLA0A067KR010.0A0A067KR01_JATCU; MYB family protein
STRINGcassava4.1_024255m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]