PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S11643.10 | ||||||||
Common Name | JCGZ_14655, LOC105643241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | Trihelix | ||||||||
Protein Properties | Length: 164aa MW: 18623.7 Da PI: 7.5605 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 72.6 | 6.8e-23 | 42 | 133 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+a+r+++ +lrrg+lk+++W+ev++++ ++++qC++k+e+l+kry+ + +++++ s+ ss++++f++++a Jcr4S11643.10 42 CWSHDETVALIDAYRDKWYTLRRGNLKANHWQEVADAVarrcPTASPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFSSSWVHFKRMDA 133 8***********************************995443444558999***********************9789************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.9E-24 | 41 | 134 | No hit | No description |
PROSITE profile | PS50090 | 6.098 | 43 | 103 | IPR017877 | Myb-like domain |
SMART | SM00595 | 1.1E-14 | 50 | 139 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MSATAAGSPS HQDSTLLPSN PIPALPAPPQ PSTNPRRLPP PCWSHDETVA LIDAYRDKWY 60 TLRRGNLKAN HWQEVADAVA RRCPTASPPK TAVQCRHKME KLRKRYRTEI QRARSMPVSR 120 FSSSWVHFKR MDAMEKGPQA KADFNSESDG EDNEEENEED DDNQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012083724.1 | 1e-121 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A067KAP1 | 1e-119 | A0A067KAP1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_010599m | 2e-86 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4638 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 7e-59 | Trihelix family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105643241 |
Publications ? help Back to Top | |||
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