PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11436.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 357aa    MW: 41386.1 Da    PI: 5.6486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11436.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++l + +   G  +W+++++  g+ R++k+c++rw +yl
    Jcr4S11436.40 14 RGPWTIEEDQKLMKFILNNGIQCWRLVPKLAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding51.81.8e-1667109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+ T+ E++++++++ +lG++ W++Ia++++ gRt++++k++w+
    Jcr4S11436.40  67 RGALTESEEDQIIELHSRLGNR-WSKIAAHFP-GRTDNEIKNHWN 109
                      7889******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-20564IPR009057Homeodomain-like
PROSITE profilePS5129415.965961IPR017930Myb domain
SuperFamilySSF466893.0E-2811108IPR009057Homeodomain-like
SMARTSM007171.8E-81363IPR001005SANT/Myb domain
PfamPF002492.1E-121461IPR001005SANT/Myb domain
CDDcd001671.21E-51661No hitNo description
PROSITE profilePS5129426.66562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2465116IPR009057Homeodomain-like
SMARTSM007179.8E-1566114IPR001005SANT/Myb domain
PfamPF002494.3E-1567109IPR001005SANT/Myb domain
CDDcd001674.79E-1071109No hitNo description
Gene3DG3DSA:2.60.40.7902.1E-29204356IPR008978HSP20-like chaperone
SuperFamilySSF497642.51E-25226347IPR008978HSP20-like chaperone
CDDcd064646.85E-21246344No hitNo description
PfamPF000116.0E-20246348IPR002068Alpha crystallin/Hsp20 domain
PROSITE profilePS0103120.307246344IPR002068Alpha crystallin/Hsp20 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTIE EDQKLMKFIL NNGIQCWRLV PKLAGLLRCG KSCRLRWMNY  60
LRPDLKRGAL TESEEDQIIE LHSRLGNRWS KIAAHFPGRT DNEIKNHWNI RIKKKLKILG  120
IDPQTHKRID TEEAETAKEE SKVKDYQIES ESLRKEFDAG SVLNSCTDKS ESFCSKIEES  180
VIREESQQNW IDNVDSLLSW NGFIQQMMET MERMMEDPFA YTGNWPSEPP SPVERSGYSR  240
GRTPWEIKEG ETEYKMRFDM PGMTKEDVKV WVEEKMLVLK AEEVPEKNNV NGAQNGIEEE  300
EEDGGWSAKS YGKYRCRIAL PENIQFEKIK VEVKDGVLYI TIPKASTTGR ILDINVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5nms_A3e-332043571114325.3 kDa heat shock protein, chloroplastic
5nms_C3e-332043571114325.3 kDa heat shock protein, chloroplastic
5nms_D3e-332043571114325.3 kDa heat shock protein, chloroplastic
5nms_G3e-332043571114325.3 kDa heat shock protein, chloroplastic
5nms_I3e-332043571114325.3 kDa heat shock protein, chloroplastic
5nms_J3e-332043571114325.3 kDa heat shock protein, chloroplastic
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0175530.0KM017553.1 Jatropha curcas isolate A MYB117 (MYB117) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292961.11e-135myb-related protein 315
SwissprotP813946e-72MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A067JS301e-141A0A067JS30_JATCU; MYB family protein
STRINGPOPTR_0001s36220.17e-86(Populus trichocarpa)
STRINGcassava4.1_031140m7e-86(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-71myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]