PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11436.10
Common NameGRAS33, JCGZ_17897
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 118aa    MW: 13703.9 Da    PI: 9.2896
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11436.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS135.55.5e-421116258374
           GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                    +eal+yysa+fdsl+a lp+ +  r+k+E++++++ei+n+v+ceg++r+erhe+l +Wr+r+++aGF+p+p+++   +qak  l++ k  +gy+v 
  Jcr4S11436.10   1 MEALHYYSAIFDSLDAMLPKYDTRRAKIEQFFFAEEIKNIVSCEGQARVERHERLDQWRRRMSRAGFQPAPIKKI--AQAKQWLANAKiCEGYTVT 94 
                    69**********************************************************************975..599999999999******* PP

           GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                    ee+ +lvlgWk++p+v++S+W+
  Jcr4S11436.10  95 EEKSCLVLGWKSKPIVAASCWK 116
                    *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.9E-391116IPR005202Transcription factor GRAS
PROSITE profilePS5098519.333197IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEALHYYSAI FDSLDAMLPK YDTRRAKIEQ FFFAEEIKNI VSCEGQARVE RHERLDQWRR  60
RMSRAGFQPA PIKKIAQAKQ WLANAKICEG YTVTEEKSCL VLGWKSKPIV AASCWKCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-151115264378Protein SCARECROW
5b3h_A5e-151115263377Protein SCARECROW
5b3h_D5e-151115263377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052820.0KM405282.1 Jatropha curcas GRAS33 protein (GRAS33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085888.12e-81DELLA protein RGL1
SwissprotG7L1661e-39RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A067K4N64e-80A0A067K4N6_JATCU; GRAS33 protein
STRINGAquca_123_00013.11e-73(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2545633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.19e-31scarecrow-like 3
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]