PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11123.10
Common NameJCGZ_26896, LOC105630233
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 258aa    MW: 28551.2 Da    PI: 4.9156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11123.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-192775355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Jcr4S11123.10 27 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARNMRG 75
                   56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-342689IPR001471AP2/ERF domain
PROSITE profilePS5103220.7712683IPR001471AP2/ERF domain
CDDcd000186.22E-312682No hitNo description
Gene3DG3DSA:3.30.730.105.6E-292783IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-212784IPR016177DNA-binding domain
PRINTSPR003673.1E-82738IPR001471AP2/ERF domain
PfamPF008474.6E-122975IPR001471AP2/ERF domain
PRINTSPR003673.1E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MNPSPSKSKK KQATPQQQEP AAQGGRFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAE  60
EAALAYDRAA RNMRGSRART NFVYSDMPAG SSVTSIISPD EQQQIHSLHQ QQQQQQLEHY  120
NASMFVPPAQ SNQPDPLSFH DFSSVSQCHF SNDFSSMIGP DTWSCSSSTY QEPVITNDEL  180
PPLPCDLSSN FSSSVGSGLM GFEEQTTLTN GFESVSGSGS YFGFDSGEYV HSPLFSRMPP  240
VSETVPEGFD LGSSTYFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212282162ATERF1
3gcc_A2e-212282162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067386.10.0ethylene-responsive transcription factor LEP
SwissprotQ9M6445e-59LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A067L3S20.0A0A067L3S2_JATCU; Uncharacterized protein
STRINGcassava4.1_024772m1e-107(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-43ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]