PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S10365.40 | ||||||||
Common Name | JCGZ_21334 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 185aa MW: 22049.9 Da PI: 4.4934 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +lv +++++G +W+ ++ g+ R++k+c++rw +yl Jcr4S10365.40 14 KGTWSPEEDRKLVAYINRYGIWNWNEMPKAAGLSRSGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 31.2 | 5.2e-10 | 67 | 97 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg++++eEde ++ ++++lG+ W++Ia++m+ Jcr4S10365.40 67 RGNFSKEEDETILTLHEMLGNS-WSAIAKKMP 97 89******************99.********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.604 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.8E-25 | 11 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.65E-9 | 16 | 61 | No hit | No description |
Pfam | PF13921 | 6.3E-14 | 17 | 76 | No hit | No description |
PROSITE profile | PS50090 | 7.364 | 62 | 99 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1E-4 | 66 | 134 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-16 | 69 | 124 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MLVIMEKREQ RLKKGTWSPE EDRKLVAYIN RYGIWNWNEM PKAAGLSRSG KSCRLRWMNY 60 LRPDIKRGNF SKEEDETILT LHEMLGNSWS AIAKKMPDQM WLQDSSIHGC EGTEYSLVRT 120 DNDLQIMEQE NFSLSGEFLQ LFDPMEVMED DWVTNPMWIE RSAYSYNSDI IEPENNFWDY 180 SPLWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-18 | 12 | 100 | 5 | 92 | B-MYB |
1h8a_C | 3e-18 | 12 | 97 | 25 | 109 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034708 | 1e-147 | KM034708.1 Jatropha curcas clone JcMYB088 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012092400.2 | 1e-63 | myb-related protein Myb4 | ||||
TrEMBL | A0A067JDM6 | 3e-62 | A0A067JDM6_JATCU; MYB family protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 7e-39 | myb domain protein 74 |
Publications ? help Back to Top | |||
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