PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10210.20
Common NameJCGZ_14442, LOC105643356
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 570aa    MW: 63417.4 Da    PI: 8.1116
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10210.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-174692148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+ Ed+ lv avk++  ++Wk+Ia++++  Rt+ qc +rwqk+l
    Jcr4S10210.20 46 KGGWTEKEDQVLVAAVKKFNCRNWKKIAECVP-DRTDVQCLHRWQKVL 92
                     688*****************************.************986 PP
2Myb_DNA-binding51.81.9e-1698144148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W +eEd+l+ ++v + G++ W+ Ia+ ++ gR +kqc++rw+++l
    Jcr4S10210.20  98 KGPWKKEEDDLIRELVGKQGNKKWSEIAKQLP-GRIGKQCRERWHNHL 144
                      79******************************.*************97 PP
3Myb_DNA-binding51.42.6e-16150192145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT+eE++ l++a++ +G++ W+ Ia+ +  gRt++++k++w+
    Jcr4S10210.20 150 RTAWTKEEELTLIKAHAVYGNK-WAEIAKFLH-GRTENSIKNHWN 192
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3844192IPR017930Myb domain
SuperFamilySSF466898.97E-2044107IPR009057Homeodomain-like
SMARTSM007172.1E-144594IPR001005SANT/Myb domain
PfamPF002492.9E-154692IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2348109IPR009057Homeodomain-like
CDDcd001672.24E-134992No hitNo description
PROSITE profilePS5129430.22593148IPR017930Myb domain
SuperFamilySSF466893.79E-2995191IPR009057Homeodomain-like
SMARTSM007174.4E-1597146IPR001005SANT/Myb domain
CDDcd001673.00E-13100144No hitNo description
PfamPF139213.9E-17101159No hitNo description
Gene3DG3DSA:1.10.10.604.6E-26110151IPR009057Homeodomain-like
SMARTSM007179.9E-16149197IPR001005SANT/Myb domain
PROSITE profilePS5129420.416149199IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-21152198IPR009057Homeodomain-like
CDDcd001674.38E-12152192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MGEEVEQANS DSNNGGLISS HASVVANPDS IPAQGRITGP TRRSTKGGWT EKEDQVLVAA  60
VKKFNCRNWK KIAECVPDRT DVQCLHRWQK VLNPDLVKGP WKKEEDDLIR ELVGKQGNKK  120
WSEIAKQLPG RIGKQCRERW HNHLNPEIKR TAWTKEEELT LIKAHAVYGN KWAEIAKFLH  180
GRTENSIKNH WNCSVRKKVG SHLACDFNLY SSNTKSESRK FEADDQRFDE RMNLEGSMHN  240
CSLALALGNA TTMDSQFPIT SDKGNYCKFQ GKEPTFGASA ASSLTSVNYR ESQNNANTTD  300
SDYTNRIATN WTSRLCYTNN SSGNLAMFQS SCERTCELSD TVNSLHSGPL SVPLTLSLST  360
PISVAGHDRK AGEFNDKITA ARGYENTKEP NRGLLCYESL QLRDLDILVE TGSFPSTDSY  420
IKTATSPFSS STPLKHNRGI SHNCSSPEFI LKSAAKSFRS TPSIIRKRSF RNSGQSSNAI  480
LGFNDVWLPE DSTETSCNSH LSLNLCPYEK DCDSNMNPSN ERQLFLSSAK SQKLETQSEE  540
KSLDFAFNGE RDSTSITSRA SSSHNSCSGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-62461996159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-62461996159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346410.0KM034641.1 Jatropha curcas clone JcMYB021 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083843.10.0transcription factor MYB3R-3
TrEMBLA0A067JXH60.0A0A067JXH6_JATCU; MYB family protein
STRINGcassava4.1_033700m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149761314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.13e-85Homeodomain-like protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]