PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S10148.10

Common Name

JCGZ_06470, LOC105650356

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 927aa MW: 107078 Da PI: 7.7275

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S10148.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.5e-26	97	205	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkek.dgkwev 78 +fY+eYAk++GF + +++s++s+++g++++++fvC+++g+r+e++++ +++ r +ra +t+Cka+++vk+++ dg+w++ Jcr4S10148.10 97 SFYKEYAKSIGFATITKASRRSRMSGKFIDAKFVCTRYGTRRETSTEmahpaidadntpsipvkRKRGRINRAWAKTDCKACMHVKRRQqDGRWVI 192 5*****************************************999**********998888999**************99** PP FAR1 79 tkleleHnHelap 91 ++ +eHnHe++p Jcr4S10148.10 193 RSFIKEHNHEISP 205 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-24	97	205	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-30	324	417	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.2	604	640	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-6	615	642	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	7.6E-6	616	638	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MGIDLEKPSG EYHTEDSRSN VNADMVDGGN GLHDGNRVIV DCQNIAENDK DSGPTVSGRP 60 FDTTLKVYAG DGINLNAVKN LEPHDGMEFE SKEEAFSFYK EYAKSIGFAT ITKASRRSRM 120 SGKFIDAKFV CTRYGTRRET STEMAHPAID ADNTPSIPVK RKRGRINRAW AKTDCKACMH 180 VKRRQQDGRW VIRSFIKEHN HEISPDQAYY FRGHRNLDLG NNNDDALHAI RARTKKVYVS 240 MSRRSGGYKK HENQKTNVTT QSGSIRHLSL EEGDAQVMLD YFTCMQNENP NFFYAVDLNE 300 EQRLRNMFWV DAKSRVDYGY FCDVIFFDTT YIKNDYKLPF APFIGVNHHF QCLLLGRALV 360 ADETKATYVW LMRAWLRAMG GHAPKVILTD QDKPLKEAIA EVFPDTYHGF CLWHIMSKVP 420 EKLSYVMRQH EIFMTKFNKC VFTSWTNEQF DKRWWKMVER FNLRSDLWFQ SLYEDRQRWI 480 PMFLKDKFLA GMSTAQRSES IISLFDKHMQ RKTTMKEFLE QHKAILQEKF DEEAKADFET 540 WHKQPGLKSP SPFGKQMATL YTHAIFKKFQ VEVLGVVACH PRKESEDGET KTFKVQDFEE 600 NQDFIVVWND KTSSFSCSCH LFEFNGFLCR HVLIVMQMSG VHSIPSQYIL KRWTKNAKSR 660 ETMREQLDKI ESRVDRYNDL CRRAFKLGDE GSLSQESYNI AFTALEEALR KCESVNNSIQ 720 CLMVPTSPSS NRPLDYEEVD QTNGASKTKQ KDDNSGKRLV HSEPEVITIG MHESWQQLGH 780 SSLRESGRDC SYEMQESMQG MLMDSPLQEQ LNSRASNLDG FFGPQQIVQG MGQLSSIASG 840 RDDYYSNQHN MQRLGQLNAI APIHESHYMT QQRMQGMGQL HCRSQTIPSC FDIQDNLQEM 900 DQTNVGTSQS QLHGMASKHL HPKHLSR

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MGIDLEKPSG EYHTEDSRSN VNADMVDGGN GLHDGNRVIV DCQNIAENDK DSGPTVSGRP  60
FDTTLKVYAG DGINLNAVKN LEPHDGMEFE SKEEAFSFYK EYAKSIGFAT ITKASRRSRM  120
SGKFIDAKFV CTRYGTRRET STEMAHPAID ADNTPSIPVK RKRGRINRAW AKTDCKACMH  180
VKRRQQDGRW VIRSFIKEHN HEISPDQAYY FRGHRNLDLG NNNDDALHAI RARTKKVYVS  240
MSRRSGGYKK HENQKTNVTT QSGSIRHLSL EEGDAQVMLD YFTCMQNENP NFFYAVDLNE  300
EQRLRNMFWV DAKSRVDYGY FCDVIFFDTT YIKNDYKLPF APFIGVNHHF QCLLLGRALV  360
ADETKATYVW LMRAWLRAMG GHAPKVILTD QDKPLKEAIA EVFPDTYHGF CLWHIMSKVP  420
EKLSYVMRQH EIFMTKFNKC VFTSWTNEQF DKRWWKMVER FNLRSDLWFQ SLYEDRQRWI  480
PMFLKDKFLA GMSTAQRSES IISLFDKHMQ RKTTMKEFLE QHKAILQEKF DEEAKADFET  540
WHKQPGLKSP SPFGKQMATL YTHAIFKKFQ VEVLGVVACH PRKESEDGET KTFKVQDFEE  600
NQDFIVVWND KTSSFSCSCH LFEFNGFLCR HVLIVMQMSG VHSIPSQYIL KRWTKNAKSR  660
ETMREQLDKI ESRVDRYNDL CRRAFKLGDE GSLSQESYNI AFTALEEALR KCESVNNSIQ  720
CLMVPTSPSS NRPLDYEEVD QTNGASKTKQ KDDNSGKRLV HSEPEVITIG MHESWQQLGH  780
SSLRESGRDC SYEMQESMQG MLMDSPLQEQ LNSRASNLDG FFGPQQIVQG MGQLSSIASG  840
RDDYYSNQHN MQRLGQLNAI APIHESHYMT QQRMQGMGQL HCRSQTIPSC FDIQDNLQEM  900
DQTNVGTSQS QLHGMASKHL HPKHLSR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012092630.1	0.0	protein FAR1-RELATED SEQUENCE 1 isoform X1
Refseq	XP_012092632.1	0.0	protein FAR1-RELATED SEQUENCE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A067J9C7	0.0	A0A067J9C7_JATCU; Uncharacterized protein
STRING	VIT_01s0011g01470.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Entrez Gene	105650356

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]