PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10098.10
Common NameJCGZ_18290, LOC105641986
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 282aa    MW: 31705.2 Da    PI: 7.0285
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10098.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05111130120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C+ C+k+F+r  n++ H+
  Jcr4S10098.10 111 FSCSVCNKTFNRYNNMQMHM 130
                    89*****************9 PP
2zf-C2H214.40.00011196218123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk+F  + + ++H +++
  Jcr4S10098.10 196 FGCRKCGKTFAVRGDWRTHEKNC 218
                    56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.74E-5107133No hitNo description
Gene3DG3DSA:3.30.160.604.2E-6111130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.071111133IPR015880Zinc finger, C2H2-like
PfamPF128747.2E-5111130No hitNo description
PROSITE profilePS5015710.429111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SMARTSM00355200159191IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.73E-6179216No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5182216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035569196216IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQNPSFNYIS SSGSVCIEAD DQEDEDSLFL SLGPPGQHIS KHPNSLNKPR NTIDKQNPNS  60
HENAVTVALH IGPPSATTQT TSSNPNHVSS LVEGQYWIPS PAQILVGPTQ FSCSVCNKTF  120
NRYNNMQMHM WGHGSQYRKG PESLRGTKAA SSMLRLPCYC CAEGCKNNID HPRSRPLKDF  180
RTLQTHYKRK HGAKPFGCRK CGKTFAVRGD WRTHEKNCGK LWFCICGSDF KHKRSLKDHV  240
RAFGDGHTPH TVKICEVDDE EEDEDDDYDD IDDDNGDGPF MF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082035.10.0zinc finger protein WIP6
SwissprotQ9FX681e-127ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A067KC110.0A0A067KC11_JATCU; Uncharacterized protein
STRINGcassava4.1_026292m1e-155(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-129C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]