PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S10018.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HB-other | ||||||||
Protein Properties | Length: 679aa MW: 76899.2 Da PI: 10.3628 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34.1 | 4.5e-11 | 457 | 501 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F++n ps++ +e L+k+lgL+ +V+ WF+N R+ Jcr4S10018.10 457 TSAVEKLRQVFQENELPSKTVKENLSKELGLDPGKVSKWFKNARY 501 577899*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-13 | 443 | 500 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.341 | 446 | 506 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-9 | 448 | 510 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-10 | 449 | 509 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.66E-7 | 449 | 501 | No hit | No description |
Pfam | PF00046 | 1.4E-8 | 457 | 501 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MRGAEKEATL KESGRSLLSK TNNGSMLIAS LKIKKDGASS PCKKHRQQSK SKIKSIGANL 60 VKRTHIDALS KGVRSDSTSK KRISKKILKK ARDKKSPKKM ASSESRGKHS TAIASKNGKK 120 PNRDVTIKKL KKTKSKRRQK GKVEQDEPSR LQRRARYLLI KMKLEQNLID AYSGEGWKGQ 180 SREKIRPEKE LVRAKKQILK CKLGIRDIIH QLDSLSTVGC IEDSVIAPDG SVSHEHPSTK 240 DALILRWTLK TYHQEIRDGI ANFVNDIFKE ATFPDGGSTL LNPEEEWPSD DSEDDDYDPE 300 RRENSISGAG TDNDACDDSS SATSLGWSSD GEVFSGSRKW EIDNTDFRNQ SIYSSLDSDE 360 TSDGEIMSGR RQRRAVDYKK LYDEMFGKDA PAYEQFSEDE DWGPGKRKRR EKESDAASTL 420 MTLYESEKKS KKVKTNEVTG KLARDAQVRR PCFRIPTSAV EKLRQVFQEN ELPSKTVKEN 480 LSKELGLDPG KVSKWFKNAR YLALKTRKGE RFKEHSNPKI PREPRLDGME DESAGLEDLK 540 NISTETLICT SKNLKHVLHG KETKLISSSL KKNELTRASI GSLSRSNEIG VEYSDDVSLK 600 KLLKSKTKRG KKRVHSVWRS ESEEAEAEME RLCRAKVRLL NMKQTLLTLQ NDKPKKSNRN 660 KSHQDSVIFV PIAELREKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 406 | 411 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068466.1 | 0.0 | pathogenesis-related homeodomain protein | ||||
Swissprot | P48785 | 3e-90 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A067KY55 | 0.0 | A0A067KY55_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_031748m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 2e-89 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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