PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10018.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HB-other
Protein Properties Length: 679aa    MW: 76899.2 Da    PI: 10.3628
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10018.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.14.5e-11457501953
                    HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
       Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                    ++ +e L ++F++n  ps++ +e L+k+lgL+  +V+ WF+N R+
  Jcr4S10018.10 457 TSAVEKLRQVFQENELPSKTVKENLSKELGLDPGKVSKWFKNARY 501
                    577899*************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-13443500IPR009057Homeodomain-like
PROSITE profilePS5007112.341446506IPR001356Homeobox domain
SMARTSM003893.3E-9448510IPR001356Homeobox domain
SuperFamilySSF466891.97E-10449509IPR009057Homeodomain-like
CDDcd000861.66E-7449501No hitNo description
PfamPF000461.4E-8457501IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MRGAEKEATL KESGRSLLSK TNNGSMLIAS LKIKKDGASS PCKKHRQQSK SKIKSIGANL  60
VKRTHIDALS KGVRSDSTSK KRISKKILKK ARDKKSPKKM ASSESRGKHS TAIASKNGKK  120
PNRDVTIKKL KKTKSKRRQK GKVEQDEPSR LQRRARYLLI KMKLEQNLID AYSGEGWKGQ  180
SREKIRPEKE LVRAKKQILK CKLGIRDIIH QLDSLSTVGC IEDSVIAPDG SVSHEHPSTK  240
DALILRWTLK TYHQEIRDGI ANFVNDIFKE ATFPDGGSTL LNPEEEWPSD DSEDDDYDPE  300
RRENSISGAG TDNDACDDSS SATSLGWSSD GEVFSGSRKW EIDNTDFRNQ SIYSSLDSDE  360
TSDGEIMSGR RQRRAVDYKK LYDEMFGKDA PAYEQFSEDE DWGPGKRKRR EKESDAASTL  420
MTLYESEKKS KKVKTNEVTG KLARDAQVRR PCFRIPTSAV EKLRQVFQEN ELPSKTVKEN  480
LSKELGLDPG KVSKWFKNAR YLALKTRKGE RFKEHSNPKI PREPRLDGME DESAGLEDLK  540
NISTETLICT SKNLKHVLHG KETKLISSSL KKNELTRASI GSLSRSNEIG VEYSDDVSLK  600
KLLKSKTKRG KKRVHSVWRS ESEEAEAEME RLCRAKVRLL NMKQTLLTLQ NDKPKKSNRN  660
KSHQDSVIFV PIAELREKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406411RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068466.10.0pathogenesis-related homeodomain protein
SwissprotP487853e-90PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A067KY550.0A0A067KY55_JATCU; Uncharacterized protein
STRINGcassava4.1_031748m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.12e-89pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]