PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S09974.10

Common Name

JCGZ_05339, LOC105634317

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB

Protein Properties

Length: 1180aa MW: 132579 Da PI: 8.1122

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09974.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5e-08	479	522	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT Ed++l+ v++ G+ +W Ia +g++Rt+ qc +r+q Jcr4S09974.10 479 EWTVIEDKKLLFIVQEKGMTNWFDIAVSLGTNRTPFQCLERFQR 522 7*****************************************96 PP
2	Myb_DNA-binding	44.7	3.1e-14	531	574	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd +l av+ +G ++W ++a+t+ gRt+ qc +rw+k Jcr4S09974.10 531 REWTKEEDAQLRVAVEIYGENDWQSVASTLA-GRTGPQCSNRWRK 574 68***************************.*********98 PP
3	Myb_DNA-binding	44.2	4.5e-14	582	625	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT E ++l av ++G+++Wk Iar ++ gR + qc++rw + Jcr4S09974.10 582 GRWTLNESKRLEVAVMLFGPKNWKNIARFVP-GRADVQCRERWSN 625 8****************************.*********87 PP
4	Myb_DNA-binding	50.9	3.7e-16	634	675	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++WT+eEd +l+ a++++G W+++ar+++ Rt+ qc+ rw Jcr4S09974.10 634 DKWTEEEDIRLKTAIEEHGYC-WAKVARHLP-SRTDSQCRRRWK 675 69***************99.*****.*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	17	316	446	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.3E-10	469	525	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.641	472	524	IPR017877	Myb-like domain
SMART	SM00717	3.3E-7	476	526	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-12	479	534	IPR009057	Homeodomain-like
Pfam	PF13921	7.6E-12	480	541	No hit	No description
SuperFamily	SSF46689	1.06E-19	509	579	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.676	525	580	IPR017930	Myb domain
SMART	SM00717	6.3E-14	529	578	IPR001005	SANT/Myb domain
CDD	cd00167	6.88E-12	532	576	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-17	535	579	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-10	580	629	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.52E-24	580	674	IPR009057	Homeodomain-like
Pfam	PF00249	4.1E-12	582	625	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-17	582	632	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.595	582	627	IPR017930	Myb domain
CDD	cd00167	1.79E-9	583	625	No hit	No description
PROSITE profile	PS51294	23.934	628	682	IPR017930	Myb domain
SMART	SM00717	4.2E-16	632	680	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-18	633	677	IPR009057	Homeodomain-like
CDD	cd00167	1.70E-13	635	678	No hit	No description
Pfam	PF00249	1.1E-14	635	675	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1180 aa Download sequence Send to blast
QNDDDEEEIS SGNEDDGFHE DMEALRRACS LAGTNINDLD VDTGGNNSHS TSAVSADGNY 60 SGCEDDDFEL FRNVQNRFSV QSDSLEPISL MPVCAIPPDL DNDEDDFETL CAVRSRFSAY 120 DNSNILRRGE ENLLEKRGSI EASSILVSEI DTSNDSLIGR RDCEVLVNTE EGVNTANLLS 180 EIHLSGSAEQ DTCKPSWVLK DSSSFPKSAQ VFVDAIKRNR CYQKFLRSKL AQIEARIEEN 240 KKLKERVKIL RDFQASCRKI TGRALAQGKD PRIQLITARR DKINEQKFSA MHNGPAENSH 300 AANYRAALAT FPLTLNRKKW TEVEKENLRK GIRQQFQEMV LQFSVDQFSL IKCACYFGID 360 AFVKFPTFMS NPSQMSYFSL LSPVEGSSSN ANNLDAILAS IGEMEITPES IREFLPKVDW 420 DRLASLYVVG RTGAECEAHT CLSIKLALQT SRTITITYIF TIIGFGWLNC EDPLINNNEW 480 TVIEDKKLLF IVQEKGMTNW FDIAVSLGTN RTPFQCLERF QRSLNARILK REWTKEEDAQ 540 LRVAVEIYGE NDWQSVASTL AGRTGPQCSN RWRKSLRPNK MGRWTLNESK RLEVAVMLFG 600 PKNWKNIARF VPGRADVQCR ERWSNCIDPS LNMDKWTEEE DIRLKTAIEE HGYCWAKVAR 660 HLPSRTDSQC RRRWKALFPD EVPLLQAARR TQKAATISNF VDREAERPAL GPHDFLPLPI 720 IESISKPENI DQSKKRKRKT REGTVSRKDK TTPPRHISKR RRSKRSEEGI TTSSVEQPGG 780 TKNTEVEKSG GTGTVVTKRR MKCCSEKNIT EPAKDGLPSN FVSTPLVVTG GTGTDARKKK 840 KLPESHRKRN KLIDTNNQSH LTSQPENSKL GTTNFDGFQT FEGTRAASCK EKRADEHSGT 900 NICTTTNFSE ECDMLSGAVM DVPVLAANHL DSNLLVTSND EQDDAAGKPD ARSKKFTKQP 960 QERKIFIESA DSVNRLILPP GSSELRVNSS KNVEKSYLDG IYSSKTSTVP SREGQSVVLV 1020 PRQQNGHKKS KPKSKSCSKQ VFGKNDEDDI TLASFLKNKL KKRKLQVVKN ADQTVLVTER 1080 IDQRDGAKKM SPLMRDIEVQ TVNNNGLPEN ILSRENTDAK QCSNGRISET LPSCQNKETG 1140 EVDMVGAVEY VGTNIGVQKD NGEHANSFPP GFEKPIYKIH

Sequence ? help Back to Top

Protein Sequence Length: 1180 aa Download sequence Send to blast

QNDDDEEEIS SGNEDDGFHE DMEALRRACS LAGTNINDLD VDTGGNNSHS TSAVSADGNY  60
SGCEDDDFEL FRNVQNRFSV QSDSLEPISL MPVCAIPPDL DNDEDDFETL CAVRSRFSAY  120
DNSNILRRGE ENLLEKRGSI EASSILVSEI DTSNDSLIGR RDCEVLVNTE EGVNTANLLS  180
EIHLSGSAEQ DTCKPSWVLK DSSSFPKSAQ VFVDAIKRNR CYQKFLRSKL AQIEARIEEN  240
KKLKERVKIL RDFQASCRKI TGRALAQGKD PRIQLITARR DKINEQKFSA MHNGPAENSH  300
AANYRAALAT FPLTLNRKKW TEVEKENLRK GIRQQFQEMV LQFSVDQFSL IKCACYFGID  360
AFVKFPTFMS NPSQMSYFSL LSPVEGSSSN ANNLDAILAS IGEMEITPES IREFLPKVDW  420
DRLASLYVVG RTGAECEAHT CLSIKLALQT SRTITITYIF TIIGFGWLNC EDPLINNNEW  480
TVIEDKKLLF IVQEKGMTNW FDIAVSLGTN RTPFQCLERF QRSLNARILK REWTKEEDAQ  540
LRVAVEIYGE NDWQSVASTL AGRTGPQCSN RWRKSLRPNK MGRWTLNESK RLEVAVMLFG  600
PKNWKNIARF VPGRADVQCR ERWSNCIDPS LNMDKWTEEE DIRLKTAIEE HGYCWAKVAR  660
HLPSRTDSQC RRRWKALFPD EVPLLQAARR TQKAATISNF VDREAERPAL GPHDFLPLPI  720
IESISKPENI DQSKKRKRKT REGTVSRKDK TTPPRHISKR RRSKRSEEGI TTSSVEQPGG  780
TKNTEVEKSG GTGTVVTKRR MKCCSEKNIT EPAKDGLPSN FVSTPLVVTG GTGTDARKKK  840
KLPESHRKRN KLIDTNNQSH LTSQPENSKL GTTNFDGFQT FEGTRAASCK EKRADEHSGT  900
NICTTTNFSE ECDMLSGAVM DVPVLAANHL DSNLLVTSND EQDDAAGKPD ARSKKFTKQP  960
QERKIFIESA DSVNRLILPP GSSELRVNSS KNVEKSYLDG IYSSKTSTVP SREGQSVVLV  1020
PRQQNGHKKS KPKSKSCSKQ VFGKNDEDDI TLASFLKNKL KKRKLQVVKN ADQTVLVTER  1080
IDQRDGAKKM SPLMRDIEVQ TVNNNGLPEN ILSRENTDAK QCSNGRISET LPSCQNKETG  1140
EVDMVGAVEY VGTNIGVQKD NGEHANSFPP GFEKPIYKIH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	4e-30	480	682	6	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-30	480	682	6	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	733	738	KKRKRK
2	1055	1063	LKNKLKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034634	0.0	KM034634.1 Jatropha curcas clone JcMYB013 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072541.1	0.0	uncharacterized protein LOC105634317
TrEMBL	A0A067L078	0.0	A0A067L078_JATCU; MYB family protein
STRING	cassava4.1_000461m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7441	33	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	myb domain protein 4r1

Link Out ? help Back to Top
Entrez Gene	105634317

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]