PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S09974.10 | ||||||||
Common Name | JCGZ_05339, LOC105634317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 1180aa MW: 132579 Da PI: 8.1122 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 5e-08 | 479 | 522 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT Ed++l+ v++ G+ +W Ia +g++Rt+ qc +r+q Jcr4S09974.10 479 EWTVIEDKKLLFIVQEKGMTNWFDIAVSLGTNRTPFQCLERFQR 522 7*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3.1e-14 | 531 | 574 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd +l av+ +G ++W ++a+t+ gRt+ qc +rw+k Jcr4S09974.10 531 REWTKEEDAQLRVAVEIYGENDWQSVASTLA-GRTGPQCSNRWRK 574 68*****************************.***********98 PP | |||||||
3 | Myb_DNA-binding | 44.2 | 4.5e-14 | 582 | 625 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT E ++l av ++G+++Wk Iar ++ gR + qc++rw + Jcr4S09974.10 582 GRWTLNESKRLEVAVMLFGPKNWKNIARFVP-GRADVQCRERWSN 625 8******************************.***********87 PP | |||||||
4 | Myb_DNA-binding | 50.9 | 3.7e-16 | 634 | 675 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++WT+eEd +l+ a++++G W+++ar+++ Rt+ qc+ rw Jcr4S09974.10 634 DKWTEEEDIRLKTAIEEHGYC-WAKVARHLP-SRTDSQCRRRWK 675 69*****************99.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 17 | 316 | 446 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.3E-10 | 469 | 525 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.641 | 472 | 524 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.3E-7 | 476 | 526 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-12 | 479 | 534 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 7.6E-12 | 480 | 541 | No hit | No description |
SuperFamily | SSF46689 | 1.06E-19 | 509 | 579 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.676 | 525 | 580 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-14 | 529 | 578 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.88E-12 | 532 | 576 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 535 | 579 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-10 | 580 | 629 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.52E-24 | 580 | 674 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-12 | 582 | 625 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 582 | 632 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.595 | 582 | 627 | IPR017930 | Myb domain |
CDD | cd00167 | 1.79E-9 | 583 | 625 | No hit | No description |
PROSITE profile | PS51294 | 23.934 | 628 | 682 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-16 | 632 | 680 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-18 | 633 | 677 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-13 | 635 | 678 | No hit | No description |
Pfam | PF00249 | 1.1E-14 | 635 | 675 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1180 aa Download sequence Send to blast |
QNDDDEEEIS SGNEDDGFHE DMEALRRACS LAGTNINDLD VDTGGNNSHS TSAVSADGNY 60 SGCEDDDFEL FRNVQNRFSV QSDSLEPISL MPVCAIPPDL DNDEDDFETL CAVRSRFSAY 120 DNSNILRRGE ENLLEKRGSI EASSILVSEI DTSNDSLIGR RDCEVLVNTE EGVNTANLLS 180 EIHLSGSAEQ DTCKPSWVLK DSSSFPKSAQ VFVDAIKRNR CYQKFLRSKL AQIEARIEEN 240 KKLKERVKIL RDFQASCRKI TGRALAQGKD PRIQLITARR DKINEQKFSA MHNGPAENSH 300 AANYRAALAT FPLTLNRKKW TEVEKENLRK GIRQQFQEMV LQFSVDQFSL IKCACYFGID 360 AFVKFPTFMS NPSQMSYFSL LSPVEGSSSN ANNLDAILAS IGEMEITPES IREFLPKVDW 420 DRLASLYVVG RTGAECEAHT CLSIKLALQT SRTITITYIF TIIGFGWLNC EDPLINNNEW 480 TVIEDKKLLF IVQEKGMTNW FDIAVSLGTN RTPFQCLERF QRSLNARILK REWTKEEDAQ 540 LRVAVEIYGE NDWQSVASTL AGRTGPQCSN RWRKSLRPNK MGRWTLNESK RLEVAVMLFG 600 PKNWKNIARF VPGRADVQCR ERWSNCIDPS LNMDKWTEEE DIRLKTAIEE HGYCWAKVAR 660 HLPSRTDSQC RRRWKALFPD EVPLLQAARR TQKAATISNF VDREAERPAL GPHDFLPLPI 720 IESISKPENI DQSKKRKRKT REGTVSRKDK TTPPRHISKR RRSKRSEEGI TTSSVEQPGG 780 TKNTEVEKSG GTGTVVTKRR MKCCSEKNIT EPAKDGLPSN FVSTPLVVTG GTGTDARKKK 840 KLPESHRKRN KLIDTNNQSH LTSQPENSKL GTTNFDGFQT FEGTRAASCK EKRADEHSGT 900 NICTTTNFSE ECDMLSGAVM DVPVLAANHL DSNLLVTSND EQDDAAGKPD ARSKKFTKQP 960 QERKIFIESA DSVNRLILPP GSSELRVNSS KNVEKSYLDG IYSSKTSTVP SREGQSVVLV 1020 PRQQNGHKKS KPKSKSCSKQ VFGKNDEDDI TLASFLKNKL KKRKLQVVKN ADQTVLVTER 1080 IDQRDGAKKM SPLMRDIEVQ TVNNNGLPEN ILSRENTDAK QCSNGRISET LPSCQNKETG 1140 EVDMVGAVEY VGTNIGVQKD NGEHANSFPP GFEKPIYKIH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-30 | 480 | 682 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-30 | 480 | 682 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 733 | 738 | KKRKRK |
2 | 1055 | 1063 | LKNKLKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034634 | 0.0 | KM034634.1 Jatropha curcas clone JcMYB013 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012072541.1 | 0.0 | uncharacterized protein LOC105634317 | ||||
TrEMBL | A0A067L078 | 0.0 | A0A067L078_JATCU; MYB family protein | ||||
STRING | cassava4.1_000461m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7441 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 0.0 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Entrez Gene | 105634317 |
Publications ? help Back to Top | |||
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