PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S09951.10

Common Name

JCGZ_19811

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

M-type_MADS

Protein Properties

Length: 366aa MW: 40994.6 Da PI: 9.2987

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09951.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35	1.9e-11	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ + kRr g+lKK +EL +LC++ + ii+s++ Jcr4S09951.10 11 IVNDALRKANLKKRRIGLLKKVSELTTLCGVSAFAIIYSPDE 52 669999*********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.297	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.7E-17	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.24E-24	2	85	No hit	No description
SuperFamily	SSF55455	5.49E-20	2	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-11	11	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MTRKKVKLVW IVNDALRKAN LKKRRIGLLK KVSELTTLCG VSAFAIIYSP DETEPMFWPS 60 RLLVEQLLMR YQNMPKIERS KKMMNQESYL KERVVKVQAQ SRKNQRKNRD VEMSYLINKL 120 HKGNGADDFE FNELQVLIWL LGEKMKDLRK RVEYFQQFPP LPPTTSFSPP LPLPNEGPTM 180 QEPGHQLTDV ASANGVGDGD IRNSNPRDTM ICDQWYLDII NNNNDNLAGS SGAKNDMMNH 240 HPYAYNITYN GGDTGFPTGS TGNTFSLGLV SSNINMGGGG NHFQMRQQSI HANINSISGH 300 SFGLGLQPYQ GNIDNYNGGN GMGLRMPPPA IAIGASEPEM HGLFAGGSDT GTLYDIIKPW 360 YHNFSH

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MTRKKVKLVW IVNDALRKAN LKKRRIGLLK KVSELTTLCG VSAFAIIYSP DETEPMFWPS  60
RLLVEQLLMR YQNMPKIERS KKMMNQESYL KERVVKVQAQ SRKNQRKNRD VEMSYLINKL  120
HKGNGADDFE FNELQVLIWL LGEKMKDLRK RVEYFQQFPP LPPTTSFSPP LPLPNEGPTM  180
QEPGHQLTDV ASANGVGDGD IRNSNPRDTM ICDQWYLDII NNNNDNLAGS SGAKNDMMNH  240
HPYAYNITYN GGDTGFPTGS TGNTFSLGLV SSNINMGGGG NHFQMRQQSI HANINSISGH  300
SFGLGLQPYQ GNIDNYNGGN GMGLRMPPPA IAIGASEPEM HGLFAGGSDT GTLYDIIKPW  360
YHNFSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLVWIVNDALRKANLKKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084552.2	0.0	uncharacterized protein LOC105643919
TrEMBL	A0A067K5A7	0.0	A0A067K5A7_JATCU; Uncharacterized protein
STRING	cassava4.1_021594m	1e-110	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11014	19	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	6e-31	AGAMOUS-like 80

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]