PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S09931.10 | ||||||||
Common Name | JCGZ_07707 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 251aa MW: 27952.3 Da PI: 5.6979 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++ + +G+ +W + +++ g++R++k+c++rw++yl Jcr4S09931.10 14 RGPWSPEEDAALKRYLQTHGTAgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89******************99*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.366 | 9 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 12 | 61 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.88E-18 | 15 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.12E-9 | 16 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 62 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAALKRYLQ THGTAGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIF SLYNQMETET NCTFTFCDSF VNTKEGSSIL DSSTPPTNGV 120 GETLMDSSYD FPDYDYYSFN GLDLFDQDKA ASEIASRYPN KPPLQPRTTQ IVTSPPSCTA 180 ATILRDTPPD LLLSERLSTQ GTTCRFSFGL GPVVTPSHRD FLTLRSPLFT PAPNLGSDTT 240 CWDRAYHPTP N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034739 | 1e-154 | KM034739.1 Jatropha curcas clone JcMYB120 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077563.1 | 2e-58 | transcription factor MYB36 | ||||
TrEMBL | A0A067KD33 | 1e-175 | A0A067KD33_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 6e-50 | MYB family protein |
Publications ? help Back to Top | |||
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