PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09904.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 495aa    MW: 56043.7 Da    PI: 6.1808
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09904.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.51.8e-38241533128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    +G+rFhP+dee+v+++L +k++g+++ ++++++e+d+++ +Pwd+p  + +++++  w+fFs+ d k++++kr+nr tk+g+Wk+tgk ++v++k 
  Jcr4S09904.20  24 VGYRFHPSDEEIVSYFLYHKMNGEDFLVDHIVREIDLCQNDPWDIPdlSGISSDDPVWHFFSRIDYKHSHSKRANRRTKAGFWKSTGKVRRVKAKq 119
                    7************************999899**************95447777888************************************9987 PP

            NAM  96 kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                    +ge++g k+tLvfy k  ++++++t+Wv+hey+ 
  Jcr4S09904.20 120 TGEEIGSKRTLVFYvKLPDSETTRTNWVIHEYKS 153
                    8899**********545888999*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-3922171IPR003441NAC domain
PROSITE profilePS5100543.14622171IPR003441NAC domain
PfamPF023655.0E-2324152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MNPHLDAHLH SNPPGERFRL PHDVGYRFHP SDEEIVSYFL YHKMNGEDFL VDHIVREIDL  60
CQNDPWDIPD LSGISSDDPV WHFFSRIDYK HSHSKRANRR TKAGFWKSTG KVRRVKAKQT  120
GEEIGSKRTL VFYVKLPDSE TTRTNWVIHE YKSKTILPEQ RDFVFCRLKH KTDEEIDNSV  180
NDEGEPSRPV DADVENHAVQ TDAEQAPQSH VSVTRIEEIS NEHTSCRDNQ HIGLNFHDTS  240
EDDVDPIKLA DSFLSLDQGF SEESELILPH EFRPPKLLNE GFIEDRSDLE MEVGHGKPIQ  300
ALGQASTASV AAARPLQINY IGSVGRGESS IYEHRANEGI IQDEVSAIRP GKISCTDKPS  360
HGEEKCYLDG GYGQDKYIYC LQEFPTFSKP IKIGGFNLSV KKRCQFKPNK QPANQKSNVR  420
SAGAAGSDKE ISSICSETAS IHSPTPASVY IVNVLDIHKA CNVKIIYNGI DQKEFCPDIT  480
IYRLYILDRK ICIVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-252517120165NO APICAL MERISTEM PROTEIN
1ut4_B3e-252517120165NO APICAL MERISTEM PROTEIN
1ut7_A3e-252517120165NO APICAL MERISTEM PROTEIN
1ut7_B3e-252517120165NO APICAL MERISTEM PROTEIN
3swm_A4e-252517123168NAC domain-containing protein 19
3swm_B4e-252517123168NAC domain-containing protein 19
3swm_C4e-252517123168NAC domain-containing protein 19
3swm_D4e-252517123168NAC domain-containing protein 19
3swp_A4e-252517123168NAC domain-containing protein 19
3swp_B4e-252517123168NAC domain-containing protein 19
3swp_C4e-252517123168NAC domain-containing protein 19
3swp_D4e-252517123168NAC domain-containing protein 19
4dul_A3e-252517120165NAC domain-containing protein 19
4dul_B3e-252517120165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753521e-163KC775352.1 Jatropha curcas NAC transcription factor 074 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083078.10.0protein NTM1-like 9 isoform X4
TrEMBLR4NHS60.0R4NHS6_JATCU; NAC transcription factor 074
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14584713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-38NAC transcription factor-like 9