PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09457.20
Common NameJCGZ_24875, LOC105631557
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 325aa    MW: 36028.9 Da    PI: 6.712
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09457.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.2e-17220254135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Jcr4S09457.20 220 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 254
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.5E-8219306IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.2214250IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-15214264IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-14218277No hitNo description
Gene3DG3DSA:3.30.50.107.5E-14218252IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.12E-12219266No hitNo description
PfamPF003207.8E-15220254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEAPDFFIGG YFCGGAATEF LPEKRISDQK PGEHFAVDDL LDLPNDDDAI MTDGFFDNIT  60
KNCTATTDSS TFTSNDSCNS SVSGNHVGYQ NFADSHFSSE LCVPYDDLAE LEWLSNFVED  120
SFSTQQNLQP NLHILSGSKP HTPESSSSES HPEPLARNPN NPMFQPETPL PGKARSKRSR  180
AAPCDWSTRL LHLSTTTKAP SKKHGNVNSN PETDTLVRKC LHCAAEKTPQ WRTGPMGPKT  240
LCNACGVRYK SGRLVPEYRP AASPTFVSAK HSNSHRKVLE LRRQKELQRA QHEQFLHQSS  300
IFGVSNGGDD FLIHHHGGPN FRQMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069102.10.0GATA transcription factor 12
SwissprotO826322e-78GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A067KXE60.0A0A067KXE6_JATCU; GATA transcription factor
STRINGcassava4.1_022241m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-75GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]