PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S09416.30

Common Name

JCGZ_13044, LOC105638814

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

M-type_MADS

Protein Properties

Length: 321aa MW: 37330.9 Da PI: 9.0672

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S09416.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.6	1.6e-13	10	50	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+ ++ +++f kR++ ++KK +EL +LC+++ ++iif ++ Jcr4S09416.30 10 IKKERALKISFRKRKKSLFKKGYELATLCGIDLCIIIFDPK 50 666677789****************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.676	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-5	1	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-14	8	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-15	10	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MDTELRKDMI KKERALKISF RKRKKSLFKK GYELATLCGI DLCIIIFDPK QGDNKQVKPE 60 TWPADPLKVK HIIKKYKQKV QEKRHCQISD HSKNKLKKVN AQLTDLRKQI SVTKYPPWND 120 RINNYSEDEL KQLICELDAK LKSADDRIKM MKETDTNHME RSFFLEAQDH RSHGYSSGQQ 180 QSNILDVMPI DIQVPSYFQD GSLGYPHMLP LNPHFYGNWQ PKMWNDIRNS SESVAAAQNN 240 DTQFPQVSIP MCYGQASWKW EDVMCNNNVN PWLNYLAPAM QPMPAPFLQY PMMVGVLPEM 300 LTSQNNGITD FLQMKEKDAG N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	22	KKERALKISFRKR
2	20	24	RKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078067.2	0.0	agamous-like MADS-box protein AGL82
TrEMBL	A0A067KDA6	0.0	A0A067KDA6_JATCU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	3e-10	M-type_MADS family protein

Link Out ? help Back to Top
Entrez Gene	105638814

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]