PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S09294.20 | ||||||||
Common Name | JCGZ_07671, LOC105638149 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GATA | ||||||||
Protein Properties | Length: 229aa MW: 25019.5 Da PI: 10.2978 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60 | 3.1e-19 | 89 | 122 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + Jcr4S09294.20 89 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 122 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.8E-19 | 83 | 134 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-13 | 83 | 124 | No hit | No description |
PROSITE profile | PS50114 | 12.967 | 83 | 119 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-15 | 87 | 122 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.72E-13 | 88 | 120 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 89 | 114 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.1E-17 | 89 | 122 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MYRKANKLIS CKREDNIIGD YYDGNGGGGG EGSSSITKWL PSKVSLMQTM INSNCSSETD 60 KPVKFTLKFQ DQQCHAKSHN TNTTTIRVCS DCNTTTTPLW RSGPRGPKSL CNACGIRQRK 120 ARRAMAAAAM ANGTVAATET LSSSSSSSTK TNYKLQYNKD KKLRTAGHVT QGKKLSKPPD 180 PPHQTQRKLC LKNLALSLSN NSALQRIFPQ DVQEAAILLM ELSCGFIHS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077288.1 | 1e-169 | putative GATA transcription factor 22 isoform X1 | ||||
TrEMBL | A0A067KP86 | 1e-167 | A0A067KP86_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_031585m | 1e-76 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 9e-20 | GATA family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105638149 |
Publications ? help Back to Top | |||
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