PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S09176.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 800aa    MW: 90593.1 Da    PI: 6.8155
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S09176.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.43.5e-1665140190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    +fY++YA++vGFs+ + + ++ k +g i++ +f+Cske  ++++ ++              C+a+l+++++++++w vtk+++eHnH+++
  Jcr4S09176.10  65 SFYDAYARRVGFSTHVGQFTRAKPDGPIVTWDFTCSKEVLKRRNFES--------------CNAMLRIERKDSNNWIVTKFVEEHNHSMV 140
                    5**************************************99987766..............**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1365140IPR004330FAR1 DNA binding domain
PfamPF105511.6E-29273365IPR018289MULE transposase domain
PROSITE profilePS5096611.041523559IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-10523557IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-7534561IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MDVEGLHVEG ENEDDSMKVN AVSNKPDKRS LTEDSAEEIV GNQDDNGNAL PHVGMEFESE  60
DSAKSFYDAY ARRVGFSTHV GQFTRAKPDG PIVTWDFTCS KEVLKRRNFE SCNAMLRIER  120
KDSNNWIVTK FVEEHNHSMV IPSKVHYLRP RRHFAGATKN LAEASDASSD VYVVIDGNHV  180
SHEPIRVRNV SPVEPNHPVR NVAYVPMNYA RHPSRKRTLG RDAQNLLNYF QKMQAENPGF  240
YYAIQLDDDN HMTNVFWADA RSRMAYNHFG DAVVFDTMYR PNQYQVPFAP FTGVNHHGQM  300
VLFGCALLLD ESESSFTWLF KTWLSAMNDR PPISLTTDQD RAIQMAVAQV LPETRHCICK  360
WHILREGQER LSHIYLAHPS FYGELRMSGF KLFIMLAKIG HQFIFVALSL LRSLQTKELA  420
LFLMGMLLNR PQYLCSLSSM KELLENSLEK EIEADYDTIC TTPVLKTPSP MEQQAASLYT  480
KKVFSKFQEE LVETFVYTAN NIEDDGIVSK YRVAKYEHDD KAYIVTLNIS EMKATCSCQM  540
FEYCGVLCRH ILTVFTVTNV LTLPSHYILK RWTRNAKSWV GLEGQDTDLH GIETLTSRFN  600
NLCVEAVKYA EEGAIAVETY NVAISALREG LKKIAVTKKN VAKVAPPNSQ GSGNSLEDGN  660
KKIPSSVPEM VPSFWHWQDA IPQRFNLNDM GVPVADLNQP SMGPVSIHRD GGPTDNSVVL  720
TYFKSMTWVI ENKTLTPAGK VAVINLKLHD YGKSPSGETE VQFRLTRVTL EPMLRSMGYI  780
SQQLSAPANR VAVINLKIHE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087525.10.0protein FAR1-RELATED SEQUENCE 3 isoform X1
TrEMBLA0A067JQ590.0A0A067JQ59_JATCU; Uncharacterized protein
STRINGcassava4.1_001529m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-157FAR1-related sequence 5