PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S08876.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 27346.1 Da PI: 7.02 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.9 | 7.5e-11 | 14 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd l ++v+ +G g W+++a+ g k+rw++yl Jcr4S08876.20 14 RGSWTAEEDHVLREYVRIHGEGKWAKVAKATG--------KLRWLNYL 53 89****************************99........77887775 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ Jcr4S08876.20 59 RGNITEDEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNSI 103 7999******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.409 | 9 | 53 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-24 | 12 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-7 | 13 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-8 | 14 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-15 | 15 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.549 | 54 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-16 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 59 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-25 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-11 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRCPHFPKE GLNRGSWTAE EDHVLREYVR IHGEGKWAKV AKATGKLRWL NYLRPNIKRG 60 NITEDEEDLI IRLHNLLGNR WSLIAGRLPG RTDNEIKNYW NSILKKKVDN KQQNKKITNA 120 DIAVKPTVSI HESLQVKESD PSGDDGTLPN TCDWDLMTFE VKGEQFNLSD FLQTEDFSNV 180 IVPATEDGEA DFFSEAILKN WTSRGIVFCL SLIKSLFFKS NVLDPFLFFC PFKCSFYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 12 | 108 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034688 | 0.0 | KM034688.1 Jatropha curcas clone JcMYB068 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077552.1 | 1e-145 | transcription factor WER | ||||
TrEMBL | A0A097HUQ7 | 1e-143 | A0A097HUQ7_JATCU; MYB family protein | ||||
STRING | XP_009334744.1 | 9e-55 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 8e-45 | MYB family protein |