PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S08637.30

Common Name

JCGZ_09088, LOC105636312, WRKY38

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 301aa MW: 33670.4 Da PI: 4.7936

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S08637.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.4	5.3e-32	119	175	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+ed+++++itYeg H h Jcr4S08637.30 119 DDGYKWRKYGQKSIKNSQNPRSYYRCTNPRCSAKKQVERSSEDQDTLIITYEGLHLH 175 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-29	113	175	IPR003657	WRKY domain
PROSITE profile	PS50811	26.073	113	178	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-26	115	175	IPR003657	WRKY domain
SMART	SM00774	1.1E-34	118	177	IPR003657	WRKY domain
Pfam	PF03106	2.3E-25	119	175	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEEEVKAAMT NWLEGAEDEL VTELLDNESP FFLLPNDTVE SKPNPSDDET TIARLISTVY 60 SGPTIHDIEN ALSITANHRL QSQQVVSQAR VSMFERGFSK IENNKYTLKL KTCGNGMADD 120 GYKWRKYGQK SIKNSQNPRS YYRCTNPRCS AKKQVERSSE DQDTLIITYE GLHLHFAYPY 180 FLVDQPDIIN PPLKKPKKPI TEAETQQAPE EAQELGPSNS HASATTASFE DCMQESIMEA 240 EGPQGLLEDV VPFMIRNPSN NNNVSSNSSS CSPPTSPNSS LSWSSNHSHS CFDIGLNIRI 300 R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	117	179	13	75	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485290	0.0	KC485290.1 Jatropha curcas WRKY transcription factor 38 (WRKY38) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074960.1	0.0	probable WRKY transcription factor 49
TrEMBL	S5CS72	0.0	S5CS72_JATCU; WRKY transcription factor 38
STRING	XP_002530990.1	1e-114	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7118	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	3e-51	WRKY DNA-binding protein 49

Link Out ? help Back to Top
Entrez Gene	105636312

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]