PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S08531.10 | ||||||||
Common Name | JCGZ_10837, LOC105636436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | G2-like | ||||||||
Protein Properties | Length: 384aa MW: 43526.2 Da PI: 8.8106 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.9e-32 | 204 | 257 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Jcr4S08531.10 204 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 257 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-15 | 201 | 257 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 202 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-23 | 204 | 257 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 205 | 256 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MELFPAQPDL SLQISPPNSK PTSTWRRTEE EMDLGFWKRA LDSRNTSMSS MAKPDNSCFE 60 LSLSNPRVSE SNSNNHFHLL QNTTNYNSSN NLFHSFQQNN QFYPHHHLFQ QQQQQQNQQQ 120 QQQQGLSQDL GFLRPIRGIP VYQNPPTLST TPAFPFPQHP LDNTTSCLAT NNSNSTSLSP 180 FQSQNLMRSR LMSRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV 240 KDLTLAHVKS HLQMYRTVKT TDRAAASSGQ SDVFDNGSSG DTSEDLMFDI QNSSRRSELT 300 MQQGRTSGNE QDKDYQGLWS NSSREAWLHV KPKDSGGNLS SLHEEMDPKC LSYERISQVS 360 SSSLSGTSPN PKKPNLEFTL GRPH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-17 | 205 | 259 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-17 | 205 | 259 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-17 | 205 | 259 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-17 | 205 | 259 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-17 | 205 | 259 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-17 | 205 | 259 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-17 | 205 | 259 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-17 | 205 | 259 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-17 | 205 | 259 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-17 | 205 | 259 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-17 | 205 | 259 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-17 | 205 | 259 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075104.1 | 0.0 | probable transcription factor KAN2 isoform X4 | ||||
Swissprot | Q9C616 | 1e-101 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A067KUB8 | 0.0 | A0A067KUB8_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_009968m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5968 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 1e-76 | G2-like family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105636436 |
Publications ? help Back to Top | |||
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