PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08457.10
Common NameJCGZ_04708, LOC105634070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WOX
Protein Properties Length: 286aa    MW: 33669.2 Da    PI: 9.3468
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08457.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox695.7e-2251110357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    +R+++t+eql +Lee++++  r+p+ae+++++A++l    +++ ++V++WFqN++a+e++
  Jcr4S08457.10  51 SRWNPTPEQLLALEEMYRRgIRTPTAEQIQQIAAQLsrfgKIEGKNVFYWFQNHKARERQ 110
                    7*****************99**************************************97 PP

2Wus_type_Homeobox114.36.1e-3750112365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ+  Lee+y++G+rtP++e+iq+i+a+L+++Gkie+kNVfyWFQN+kaRerqk+
      Jcr4S08457.10  50 SSRWNPTPEQLLALEEMYRRGIRTPTAEQIQQIAAQLSRFGKIEGKNVFYWFQNHKARERQKR 112
                        79***********************************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.2E-748115IPR001356Homeobox domain
SuperFamilySSF466895.7E-1350111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-951110IPR009057Homeodomain-like
PfamPF000461.5E-1951110IPR001356Homeobox domain
CDDcd000862.08E-652112No hitNo description
PROSITE profilePS5007111.41856111IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNGGHKNELY NLAEFLPMIN PKTKTTLLGL NGYLEQNMRE FNCEQPLMGS SRWNPTPEQL  60
LALEEMYRRG IRTPTAEQIQ QIAAQLSRFG KIEGKNVFYW FQNHKARERQ KRLRRTVYEV  120
EQIKTLIHPS SCSECYLEGP VSMHRAAVRA ESTITTHGWS KFEEKELYQY NNNNIKNKNF  180
SQKKKNATWH AMGWYPINNM TTTRSSRLFQ RQSSRFLNLG DHKMNGYHDD EEEEEYKHEE  240
VETLELFPLC SSEDLKGSKK DTKVPIKAIN TKMSPKQYFE FLPLKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534914.10.0WUSCHEL-related homeobox 6 isoform X2
TrEMBLA0A067L0P60.0A0A067L0P6_JATCU; Uncharacterized protein
STRINGcassava4.1_022810m4e-89(Manihot esculenta)
STRINGXP_002526032.12e-89(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.19e-34WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]