PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S08457.10 | ||||||||
Common Name | JCGZ_04708, LOC105634070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | WOX | ||||||||
Protein Properties | Length: 286aa MW: 33669.2 Da PI: 9.3468 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69 | 5.7e-22 | 51 | 110 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee++++ r+p+ae+++++A++l +++ ++V++WFqN++a+e++ Jcr4S08457.10 51 SRWNPTPEQLLALEEMYRRgIRTPTAEQIQQIAAQLsrfgKIEGKNVFYWFQNHKARERQ 110 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.3 | 6.1e-37 | 50 | 112 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ+ Lee+y++G+rtP++e+iq+i+a+L+++Gkie+kNVfyWFQN+kaRerqk+ Jcr4S08457.10 50 SSRWNPTPEQLLALEEMYRRGIRTPTAEQIQQIAAQLSRFGKIEGKNVFYWFQNHKARERQKR 112 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 7.2E-7 | 48 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.7E-13 | 50 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 51 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-19 | 51 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.08E-6 | 52 | 112 | No hit | No description |
PROSITE profile | PS50071 | 11.418 | 56 | 111 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MNGGHKNELY NLAEFLPMIN PKTKTTLLGL NGYLEQNMRE FNCEQPLMGS SRWNPTPEQL 60 LALEEMYRRG IRTPTAEQIQ QIAAQLSRFG KIEGKNVFYW FQNHKARERQ KRLRRTVYEV 120 EQIKTLIHPS SCSECYLEGP VSMHRAAVRA ESTITTHGWS KFEEKELYQY NNNNIKNKNF 180 SQKKKNATWH AMGWYPINNM TTTRSSRLFQ RQSSRFLNLG DHKMNGYHDD EEEEEYKHEE 240 VETLELFPLC SSEDLKGSKK DTKVPIKAIN TKMSPKQYFE FLPLKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020534914.1 | 0.0 | WUSCHEL-related homeobox 6 isoform X2 | ||||
TrEMBL | A0A067L0P6 | 0.0 | A0A067L0P6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_022810m | 4e-89 | (Manihot esculenta) | ||||
STRING | XP_002526032.1 | 2e-89 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 9e-34 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 105634070 |
Publications ? help Back to Top | |||
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