PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08056.40
Common NameJCGZ_07144, LOC105637617
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 667aa    MW: 77622.4 Da    PI: 6.7801
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08056.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.21.3e-2359143190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    +fYn YAke GF +r+s+s  +++ +e +++++ Cs  g++++++ +     ++r+etrtgC a++++++ ++++w++ ++el HnH+++
  Jcr4S08056.40  59 DFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIRLVDSKRWRIVEVELAHNHPVS 143
                    6*********************999*****************99888.....9**********************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2159144IPR004330FAR1 DNA binding domain
PfamPF105517.7E-28266358IPR018289MULE transposase domain
PROSITE profilePS509669.235552588IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-4554585IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-6563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MEEVCLNSEP VFDEGDDYDI EEDCGIVEHD NETAERYSKK ELLPPTVGLE FDSFDEAYDF  60
YNVYAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMIV  120
IRLVDSKRWR IVEVELAHNH PVSPQVKRFY KSHKKMILAA RKAQPPPEPV TEMHTIKLFR  180
TSLMDSGCNG YSSVENGEGA NHIDHSKHLE LKEGDAHAVY NYFCRMKLTN PNFFYLMDLD  240
DDGRLRNVFW ADARSRAAYG YFCDTVAIDT TCLSNKYEIP LISFVGVNHH GQLILLGCGF  300
LGHESVEYFV WMFRAWLKCM QGQPPQVIIT DQCKRLQSAV AEVFPEARHC YCLLYIMQRV  360
PERLGGLTGF EAIKRQLNKA VYNSLKIAEF ETCWSDMIRR YGLGDNKWLQ TLYEERQRWV  420
PVYLKDIFFA GMIPIQENEG LTTFFDGYVH KHTSFKEFVD KYGLALHRKH LKEAMADLES  480
RNSTFELKTR YNFEVQLSEV YTKEVFKKFQ SEVEGMYSCF NTRQVSVNGP IVTYIVKERV  540
EVEGSEKEVR YFEVLYETSQ VDIRCICSLF NYKGYLCRHA LNVLNYNGVE EIPARYILPR  600
WSKNFKGKCP PDHSSSSIDV YNPIYWHSHL YKLAIPIVEE GAQLQDRYKI ALQELEDLLN  660
KLNLVDN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076522.10.0protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A067KEY60.0A0A067KEY6_JATCU; Uncharacterized protein
STRINGEOY294410.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]