PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S08056.40 | ||||||||
Common Name | JCGZ_07144, LOC105637617 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | FAR1 | ||||||||
Protein Properties | Length: 667aa MW: 77622.4 Da PI: 6.7801 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.2 | 1.3e-23 | 59 | 143 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ ++el HnH+++ Jcr4S08056.40 59 DFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIRLVDSKRWRIVEVELAHNHPVS 143 6*********************999*****************99888.....9**********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-21 | 59 | 144 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.7E-28 | 266 | 358 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.235 | 552 | 588 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.3E-4 | 554 | 585 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.6E-6 | 563 | 590 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MEEVCLNSEP VFDEGDDYDI EEDCGIVEHD NETAERYSKK ELLPPTVGLE FDSFDEAYDF 60 YNVYAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMIV 120 IRLVDSKRWR IVEVELAHNH PVSPQVKRFY KSHKKMILAA RKAQPPPEPV TEMHTIKLFR 180 TSLMDSGCNG YSSVENGEGA NHIDHSKHLE LKEGDAHAVY NYFCRMKLTN PNFFYLMDLD 240 DDGRLRNVFW ADARSRAAYG YFCDTVAIDT TCLSNKYEIP LISFVGVNHH GQLILLGCGF 300 LGHESVEYFV WMFRAWLKCM QGQPPQVIIT DQCKRLQSAV AEVFPEARHC YCLLYIMQRV 360 PERLGGLTGF EAIKRQLNKA VYNSLKIAEF ETCWSDMIRR YGLGDNKWLQ TLYEERQRWV 420 PVYLKDIFFA GMIPIQENEG LTTFFDGYVH KHTSFKEFVD KYGLALHRKH LKEAMADLES 480 RNSTFELKTR YNFEVQLSEV YTKEVFKKFQ SEVEGMYSCF NTRQVSVNGP IVTYIVKERV 540 EVEGSEKEVR YFEVLYETSQ VDIRCICSLF NYKGYLCRHA LNVLNYNGVE EIPARYILPR 600 WSKNFKGKCP PDHSSSSIDV YNPIYWHSHL YKLAIPIVEE GAQLQDRYKI ALQELEDLLN 660 KLNLVDN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076522.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A067KEY6 | 0.0 | A0A067KEY6_JATCU; Uncharacterized protein | ||||
STRING | EOY29441 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Entrez Gene | 105637617 |
Publications ? help Back to Top | |||
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