PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S08050.10

Common Name

JCGZ_13576, LOC105638640

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 424aa MW: 46558.3 Da PI: 6.8527

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S08050.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	196	237	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Jcr4S08050.10 196 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 237 6889*************************9877777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-6	192	256	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	195	239	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.1E-8	196	238	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-7	197	239	No hit	No description
CDD	cd14708	8.19E-25	197	249	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.7E-8	198	241	No hit	No description
PROSITE pattern	PS00036	0	200	215	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.5E-31	278	353	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MASHGIGGTG LSDSGPSNHH HHLSYATLHG INTPSTSFIN QEGSAFDFGE LEEAIVLQGV 60 KLRNDEAKAP FFTVTGRPAA TLEMFPSWPM RFQQTTPRVG SSKSGGESTD SGSAVNTLSS 120 KAEAQLDPES PVSKKASSSD HQAFDQKHLQ FQQQQIEMAS DTSRTGGGPP SELNPSSAKP 180 PQEKRKGSTS EKHLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL TQLEQDLQRA 240 RQQGLFLGGC GGAVGNISSG AAIFDMEYAR WLEDDQRHMS ELRTGLQAHL TDVDLRIIVD 300 RYISHYDEIF RLKGVAAKSD VFHLITGMWS TPAERCFLWM GGFKPSELIK MLTSQLDPLT 360 EQQIMGIYSL QQSSQQAEEA LFQGLEQLQQ SLVDTIASGP VIDGMQQMAV ALGKLANLEG 420 FVRQ

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MASHGIGGTG LSDSGPSNHH HHLSYATLHG INTPSTSFIN QEGSAFDFGE LEEAIVLQGV  60
KLRNDEAKAP FFTVTGRPAA TLEMFPSWPM RFQQTTPRVG SSKSGGESTD SGSAVNTLSS  120
KAEAQLDPES PVSKKASSSD HQAFDQKHLQ FQQQQIEMAS DTSRTGGGPP SELNPSSAKP  180
PQEKRKGSTS EKHLDAKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL TQLEQDLQRA  240
RQQGLFLGGC GGAVGNISSG AAIFDMEYAR WLEDDQRHMS ELRTGLQAHL TDVDLRIIVD  300
RYISHYDEIF RLKGVAAKSD VFHLITGMWS TPAERCFLWM GGFKPSELIK MLTSQLDPLT  360
EQQIMGIYSL QQSSQQAEEA LFQGLEQLQQ SLVDTIASGP VIDGMQQMAV ALGKLANLEG  420
FVRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU664731	1e-101	EU664731.1 Jatropha curcas microsatellite JATR124 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077857.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A067KMV4	0.0	A0A067KMV4_JATCU; Uncharacterized protein
STRING	cassava4.1_006304m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-165	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	105638640

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]