PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S08045.10

Common Name

JCGZ_24446, LOC105646363, WRKY32

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 645aa MW: 69746 Da PI: 6.9582

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S08045.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	354	412	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Jcr4S08045.10 354 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 412 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-33	338	414	IPR003657	WRKY domain
SuperFamily	SSF118290	1.27E-27	346	414	IPR003657	WRKY domain
PROSITE profile	PS50811	29.792	348	414	IPR003657	WRKY domain
SMART	SM00774	1.0E-36	353	413	IPR003657	WRKY domain
Pfam	PF03106	1.3E-26	355	412	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MAKGRSGLFI DSDLITSGFF IHNPTVLNSF PDQQIFNSNN NTKLTFMDSS TAATVPASST 60 TTTTIQFPVN LNHDANDDHH HHKHHASLPS DEKRTVIDEM DFFAEKDDVK PTNITSHHPK 120 SPTRLDFDVN TGLNLHITNT SSDQSMVDDG ISSNMDEKRS KNELAVLQAE LERTKMENLR 180 LRDMLNQVTN NYNALQMRLI TIMQNRKVED NNEDGDALET KVGNKKHAGN GAKVVPRQFM 240 DLGLAAAATG GGGGGGGGDT DELSLSSSEG RSRDRSRSPA NNVENRSNED GMVFDQEKKG 300 TIGREESPDQ GSQDWGSNKV GRFNSSKNNV DQTEATIRKA RVSVRARSEA PMITDGCQWR 360 KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTI LITTYEGNHN HPLPPAAMAM 420 ASTTSSAARM LLSGSMSSAD GLMNPNFLTR TLLPCSSSMA TISASAPFPT VTLDLTQNPN 480 PNPLQFQRQQ TQFQVPFPNP QQNYPNAANP AALLPQIFGQ ALYNQSKFSG LQMSQDMEGN 540 NSNSNNKLGH QSSPAAMQEQ GQGQGNSLAD TVSAATAAIA ADPNFTAALA AAITSIIGVA 600 HPNNITNNTN TTLTTTSNAN SNITTTSNNN SNGKNKLNNS SFQGN

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MAKGRSGLFI DSDLITSGFF IHNPTVLNSF PDQQIFNSNN NTKLTFMDSS TAATVPASST  60
TTTTIQFPVN LNHDANDDHH HHKHHASLPS DEKRTVIDEM DFFAEKDDVK PTNITSHHPK  120
SPTRLDFDVN TGLNLHITNT SSDQSMVDDG ISSNMDEKRS KNELAVLQAE LERTKMENLR  180
LRDMLNQVTN NYNALQMRLI TIMQNRKVED NNEDGDALET KVGNKKHAGN GAKVVPRQFM  240
DLGLAAAATG GGGGGGGGDT DELSLSSSEG RSRDRSRSPA NNVENRSNED GMVFDQEKKG  300
TIGREESPDQ GSQDWGSNKV GRFNSSKNNV DQTEATIRKA RVSVRARSEA PMITDGCQWR  360
KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTI LITTYEGNHN HPLPPAAMAM  420
ASTTSSAARM LLSGSMSSAD GLMNPNFLTR TLLPCSSSMA TISASAPFPT VTLDLTQNPN  480
PNPLQFQRQQ TQFQVPFPNP QQNYPNAANP AALLPQIFGQ ALYNQSKFSG LQMSQDMEGN  540
NSNSNNKLGH QSSPAAMQEQ GQGQGNSLAD TVSAATAAIA ADPNFTAALA AAITSIIGVA  600
HPNNITNNTN TTLTTTSNAN SNITTTSNNN SNGKNKLNNS SFQGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-23	340	416	1	76	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485284	0.0	KC485284.1 Jatropha curcas WRKY transcription factor 32 (WRKY32) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087599.1	0.0	probable WRKY transcription factor 31
TrEMBL	S5CFT2	0.0	S5CFT2_JATCU; WRKY transcription factor 32
STRING	cassava4.1_003305m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF866	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-110	WRKY family protein

Link Out ? help Back to Top
Entrez Gene	105646363

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]