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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Jcr4S07969.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 149aa MW: 17397.2 Da PI: 9.8552 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 37.5 | 7.8e-12 | 57 | 135 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
+fY+e+++ GF v+k++ +k g+ + + +C k k ++e+ +++r++C +++ +++++g w+vtk++ +HnH+l p
Jcr4S07969.10 57 EFYEEHGRLKGFGVTKKSAYKY--GGTYKYQIITCDKVRKLHDER----------TSKRIDCPPRVHASLRRTGMWVVTKVVRDHNHDLEP 135
6******************999..787788888999988777654..........569******************************975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.7E-8 | 57 | 135 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 149 aa Download sequence Send to blast |
MNFPLIESLY EFYEEHGRLK GFGVTKKSAY KYGVDLRCID KGSKQGMNFP LIDSLYEFYE 60 EHGRLKGFGV TKKSAYKYGG TYKYQIITCD KVRKLHDERT SKRIDCPPRV HASLRRTGMW 120 VVTKVVRDHN HDLEPSMSRL MIGVIFTVF |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021673337.1 | 2e-34 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G15090.1 | 5e-09 | FAR1 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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