PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S07855.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23099 Da PI: 10.1608 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.9 | 1.3e-18 | 9 | 46 | 8 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 qvtfskRr g++KKA+EL +LC++++a+i+fs +gk Jcr4S07855.30 9 SCQVTFSKRRIGLFKKANELAILCAMQIAIIVFSAEGK 46 569********************************997 PP | |||||||
2 | SRF-TF | 45.7 | 8.2e-15 | 69 | 101 | 3 | 35 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaev 35 ++++s qvtfskRr g++KKA+EL vLC+++ Jcr4S07855.30 69 VKDNSSGQVTFSKRRIGLFKKANELTVLCAVQL 101 6788999***********************996 PP | |||||||
3 | SRF-TF | 35 | 1.8e-11 | 162 | 190 | 17 | 45 |
HHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 17 rngilKKAeELSvLCdaevaviifsstgk 45 r g++KKA+EL +LC++++ ++ifs +gk Jcr4S07855.30 162 RIGLFKKANELAILCAMQIVIVIFSAEGK 190 67************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.67 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-12 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.16E-16 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-19 | 5 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-9 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-9 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-5 | 59 | 124 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-11 | 67 | 103 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.353 | 67 | 103 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-12 | 70 | 101 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.003 | 149 | 197 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.517 | 153 | 198 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-11 | 158 | 207 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-10 | 162 | 193 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MKMMKHNNSC QVTFSKRRIG LFKKANELAI LCAMQIAIIV FSAEGKPFSL PEGNHSHSVT 60 QSWNRNEMVK DNSSGQVTFS KRRIGLFKKA NELTVLCAVQ LRLSYSLPKT IFSAGRKPFS 120 AGNPSIGANC DCRFLCWRET IFSAGGKSFS AGNLSMEYVV ERIGLFKKAN ELAILCAMQI 180 VIVIFSAEGK PFSAGNPSME YVAERFLY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012072482.1 | 8e-21 | agamous-like MADS-box protein AGL29 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-16 | AGAMOUS-like 29 |