PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S07682.20

Common Name

JCGZ_24720, LOC105631414

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NF-YA

Protein Properties

Length: 282aa MW: 31161.6 Da PI: 8.0361

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S07682.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.6	1.5e-31	124	180	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RR Rakle+++kl +k+rkpylheSRh hAlrR+RgsgGrF Jcr4S07682.20 124 DEPIFVNAKQYNAILRRRRYRAKLEAQNKL-IKARKPYLHESRHLHALRRARGSGGRF 180 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.5E-36	122	183	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.27	123	183	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-26	125	180	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.5E-22	126	148	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	128	148	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.5E-22	157	180	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGVPQHFHGS KKLTFQLQDQ DSSSTQSTSQ SYPEVASIEE GFNDSHEKAE GGHIKLASSM 60 GTQDFIFPSQ VDYSQSLGRF PIHFAEPYYG GLLAAYGPQT MIHHPQVFGM ASARVPLPLE 120 FTEDEPIFVN AKQYNAILRR RRYRAKLEAQ NKLIKARKPY LHESRHLHAL RRARGSGGRF 180 LNAKKHPESG IPTSHGLDTA GSGELHLAGN MSESEVHQPE NHRDGASTTS CSDVTSASNS 240 DDIFQQPEFK FSGYPSHIIR SMQGRSGSMH GSGSHHHVSV LL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-18	124	184	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068910.1	0.0	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_012068912.1	0.0	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_020533875.1	0.0	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_020533876.1	0.0	nuclear transcription factor Y subunit A-3 isoform X1
Swissprot	Q93ZH2	1e-72	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A067KX27	0.0	A0A067KX27_JATCU; Uncharacterized protein
STRING	XP_002521352.1	1e-160	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10120	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	3e-64	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Entrez Gene	105631414

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]