PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S07568.10

Common Name

GRAS10, JCGZ_20291, LOC105644029

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 439aa MW: 49359.4 Da PI: 5.1052

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S07568.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	292.8	9.1e-90	45	431	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfsh 95 ++lLl+cA a++s+d +laq++++ l++ as gdp+qRl++yf++AL +r ++ +++ + + s+ + +++++ +l ++++ P+++f++ Jcr4S07568.10 45 EKLLLHCASALESNDGTLAQQVMWVLNNVASLVGDPNQRLTSYFLRALISRASKICPTPTN----FDGSSAVQRRQMSVIELagYVDLIPWHRFGF 136 689************************************************95544443....3333333444555555566******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl....vak 184 + N+aI +a+eg+ +vHi+Df+i++++QWp+L++aLa+RpegppslRiT+ + ++ + ++ee+g rL++fA+ +vpfef+v+ +k Jcr4S07568.10 137 CASNNAIFKAIEGHPKVHILDFSITYCMQWPTLIDALAKRPEGPPSLRITVPSCRPPVpplLNVSTEEVGLRLSNFAKFKEVPFEFKVIgdeiSCK 232 **********************************************97776566779999********************98887677 PP GRAS 185 rledleleeL........rvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + +++++e+L +++ +Eal++n++ l +l de+ + rd++L++vk+l+P +vv v++++d++++++ r++ +++y + f Jcr4S07568.10 233 ESSTFDFESLlthltpllNLRDDEALVINCQNWLRYLSDEPNGKVEdassLRDAFLRTVKDLNPCIVVAVDEDSDLSESNLTSRITTCFNYLWIPF 328 8888888888775555556666************9986443335569***************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 d+le+ lp++s++ri +E +g +i+n+++ eg +r+er e+ k ++r+++ GF +vp+ e++ ++k+ll +++ g+ ++ e++ lvl+Wk+ Jcr4S07568.10 329 DALETFLPKDSNQRIEYESD-IGHKIENIISYEGLQRIERLESGVKLSQRMKNNGFFSVPFCEETIREVKYLLDEHA-SGWGMKREEDILVLTWKG 422 ****************.****************************************************.8899999******* PP GRAS 365 rpLvsvSaW 373 ++ v++++W Jcr4S07568.10 423 HNSVFATVW 431 ******* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.057	18	413	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-87	45	431	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MKAELRANTT TSIPLQKPNL LRNPQNPLSG ALKGCLGNLD GACIEKLLLH CASALESNDG 60 TLAQQVMWVL NNVASLVGDP NQRLTSYFLR ALISRASKIC PTPTNFDGSS AVQRRQMSVI 120 ELAGYVDLIP WHRFGFCASN NAIFKAIEGH PKVHILDFSI TYCMQWPTLI DALAKRPEGP 180 PSLRITVPSC RPPVPPLLNV STEEVGLRLS NFAKFKEVPF EFKVIGDEIS CKESSTFDFE 240 SLLTHLTPLL NLRDDEALVI NCQNWLRYLS DEPNGKVEDA SSLRDAFLRT VKDLNPCIVV 300 AVDEDSDLSE SNLTSRITTC FNYLWIPFDA LETFLPKDSN QRIEYESDIG HKIENIISYE 360 GLQRIERLES GVKLSQRMKN NGFFSVPFCE ETIREVKYLL DEHASGWGMK REEDILVLTW 420 KGHNSVFATV WVPYGCLED

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MKAELRANTT TSIPLQKPNL LRNPQNPLSG ALKGCLGNLD GACIEKLLLH CASALESNDG  60
TLAQQVMWVL NNVASLVGDP NQRLTSYFLR ALISRASKIC PTPTNFDGSS AVQRRQMSVI  120
ELAGYVDLIP WHRFGFCASN NAIFKAIEGH PKVHILDFSI TYCMQWPTLI DALAKRPEGP  180
PSLRITVPSC RPPVPPLLNV STEEVGLRLS NFAKFKEVPF EFKVIGDEIS CKESSTFDFE  240
SLLTHLTPLL NLRDDEALVI NCQNWLRYLS DEPNGKVEDA SSLRDAFLRT VKDLNPCIVV  300
AVDEDSDLSE SNLTSRITTC FNYLWIPFDA LETFLPKDSN QRIEYESDIG HKIENIISYE  360
GLQRIERLES GVKLSQRMKN NGFFSVPFCE ETIREVKYLL DEHASGWGMK REEDILVLTW  420
KGHNSVFATV WVPYGCLED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	2e-56	18	433	12	420	Protein SHORT-ROOT
5b3h_E	2e-56	18	433	12	420	Protein SHORT-ROOT
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405250	0.0	KM405250.1 Jatropha curcas GRAS10 protein (GRAS10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012084660.1	0.0	scarecrow-like protein 32
TrEMBL	A0A067JWZ6	0.0	A0A067JWZ6_JATCU; GRAS10 protein
STRING	cassava4.1_029854m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10074	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49950.1	1e-123	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	105644029

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]