PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07536.10
Common NameJCGZ_00170, LOC105629537
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TCP
Protein Properties Length: 308aa    MW: 33023.2 Da    PI: 9.7131
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07536.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.15.4e-37771783105
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaaksk 98 
                    +k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++ +++   +  + s+g++++++++ k
  Jcr4S07536.10  77 AKRGSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTIPAIAM-SVNGTLKIPTTSNGNSEPNDPSVK 171
                    68889**************************************************************9655.233333333333333444444333 PP

            TCP  99 ksqksaa 105
                    k++k++a
  Jcr4S07536.10 172 KKRKRPA 178
                    3333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3081161IPR005333Transcription factor, TCP
PROSITE profilePS5136927.06382136IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MATIQKQEVE EDKEQRNIDL RISGRGDSLA NIDDTNDVRK TVAPKEETDT NERSARATPL  60
GFTPVSVHVP ASAMTVAKRG SSKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE  120
TIRWLLEHAE PAIIAATGTG TIPAIAMSVN GTLKIPTTSN GNSEPNDPSV KKKRKRPANS  180
EYIDINDVAV SVSAPLAPIS SQPPPPQYQA AAVTVPQGMG PSNQPQIFTF PAAAPPLVNI  240
SARPISCFPS SIATSTVAGS KPAKETSVMA APNSNSASST TTTQMLRDFS LEIYEKQELQ  300
FMTPSSKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169176VKKKRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066537.10.0transcription factor TCP9
RefseqXP_012066538.10.0transcription factor TCP9
SwissprotO646475e-81TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A067L2H40.0A0A067L2H4_JATCU; Uncharacterized protein
STRINGcassava4.1_032088m1e-131(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-62TCP family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]