PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S07536.10 | ||||||||
Common Name | JCGZ_00170, LOC105629537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | TCP | ||||||||
Protein Properties | Length: 308aa MW: 33023.2 Da PI: 9.7131 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.1 | 5.4e-37 | 77 | 178 | 3 | 105 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaaksk 98 +k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++++a ++ +++ + + s+g++++++++ k Jcr4S07536.10 77 AKRGSSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTIPAIAM-SVNGTLKIPTTSNGNSEPNDPSVK 171 68889**************************************************************9655.233333333333333444444333 PP TCP 99 ksqksaa 105 k++k++a Jcr4S07536.10 172 KKRKRPA 178 3333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-30 | 81 | 161 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.063 | 82 | 136 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MATIQKQEVE EDKEQRNIDL RISGRGDSLA NIDDTNDVRK TVAPKEETDT NERSARATPL 60 GFTPVSVHVP ASAMTVAKRG SSKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE 120 TIRWLLEHAE PAIIAATGTG TIPAIAMSVN GTLKIPTTSN GNSEPNDPSV KKKRKRPANS 180 EYIDINDVAV SVSAPLAPIS SQPPPPQYQA AAVTVPQGMG PSNQPQIFTF PAAAPPLVNI 240 SARPISCFPS SIATSTVAGS KPAKETSVMA APNSNSASST TTTQMLRDFS LEIYEKQELQ 300 FMTPSSKH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 176 | VKKKRKRP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012066537.1 | 0.0 | transcription factor TCP9 | ||||
Refseq | XP_012066538.1 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 5e-81 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A067L2H4 | 0.0 | A0A067L2H4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_032088m | 1e-131 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 4e-62 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105629537 |
Publications ? help Back to Top | |||
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