PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07410.20
Common NameJCGZ_26656, LOC105629061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 313aa    MW: 35774.1 Da    PI: 7.209
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07410.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
    Jcr4S07410.20 13 RGLWSPEEDEKLIKVITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP

2Myb_DNA-binding51.52.4e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
    Jcr4S07410.20  66 RGSFTAQEERTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-26463IPR009057Homeodomain-like
PROSITE profilePS5129418.696860IPR017930Myb domain
SuperFamilySSF466891.05E-2910107IPR009057Homeodomain-like
SMARTSM007173.1E-131262IPR001005SANT/Myb domain
PfamPF002492.3E-161360IPR001005SANT/Myb domain
CDDcd001673.54E-111660No hitNo description
PROSITE profilePS5129425.57561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2564116IPR009057Homeodomain-like
SMARTSM007173.7E-1565113IPR001005SANT/Myb domain
PfamPF002496.5E-1566109IPR001005SANT/Myb domain
CDDcd001679.01E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGHQCCSKQK VKRGLWSPEE DEKLIKVITT HGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT AQEERTIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHKLLSP NYYNNNKQNY NNSHQQKPTS VFTVSSQMKD LSMETKTSLT SFFPSIFPPS  180
TCEYQNPNNN PAVMECPSQS FSLGSVPMTC STISHEYPPG FGIIDERCFW SSSSKSGSIE  240
PDILEPSSRN EEIMKVLFEI DEKTNNNNNE FSVRQNMDTS FESSNFDFDF VESALMPEYY  300
NASPNDYHLT WDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346540.0KM034654.1 Jatropha curcas clone JcMYB034 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065967.10.0myb-related protein 308
SwissprotQ8VZQ23e-67MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A067L7B10.0A0A067L7B1_JATCU; MYB family protein
STRINGXP_002530124.11e-133(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-82myb domain protein 67
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]