PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S07404.40 | ||||||||
Common Name | JCGZ_24028, LOC105628030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 330aa MW: 36913.6 Da PI: 6.7495 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.4 | 1.9e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ ++q+G g+W++ ++ g++R++k+c++rw +yl Jcr4S07404.40 14 KGPWTPEEDQKLVKFIQQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.9e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ +++++ lG++ W++Ia++++ gRt++++k++w+++l Jcr4S07404.40 67 RGKFSQDEEQTILNLHSVLGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.464 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.03E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.82E-13 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.037 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.49E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MGRSPCCDES GLKKGPWTPE EDQKLVKFIQ QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQDEEQTILN LHSVLGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRT DMFATLPHLI ALANLKELID HHSLEEHTMR LQAEAIQMAK LQYLQCLLQP 180 PTTSSNINTS NINIPNTVFN EIEAFNLLNS LSMDLSTTTS LPGLTDSIPN FSHLPDLHVE 240 AAPNEFMVRQ EDDHHINIKS ANNNSTWVNN NPSISSSTIT TPSPTSVSAT APFLTQSSSM 300 NSSSSYGGEG STTVWQGLDL LEDPFFNEIA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-29 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-29 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM034725 | 0.0 | KM034725.1 Jatropha curcas clone JcMYB105 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012064723.1 | 0.0 | myb-related protein 330 | ||||
Swissprot | Q9S9Z2 | 1e-104 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A067LQI0 | 0.0 | A0A067LQI0_JATCU; MYB family protein | ||||
STRING | POPTR_0005s07590.1 | 1e-142 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-101 | myb domain protein 93 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105628030 |
Publications ? help Back to Top | |||
---|---|---|---|
|