PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S07300.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Nin-like

Protein Properties

Length: 900aa MW: 99536 Da PI: 7.5911

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S07300.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.8e-29	630	681	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rk+k++ Jcr4S07300.10 630 AEKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKLKKV 681 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	620	701	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-24	633	681	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence Send to blast
MDDGAFNPNS RPRTFSGTAM DLDFIDELLD DGCWLETTDG FNFLQPGLSN SGVPSDPSQY 60 SPYLESSSSL ASTNLHQVIH QEAAENNLPG NPPCNNTRGK ELTESESQNQ SSLKITSSLV 120 QPEPSPIEGS ELGTRLWIAP MAGVQSSSSV KQRLIHAIGK LKECAKDMEV LVQIWVPTKK 180 EGKCVLTTIG QPSFHSLKNE SLASYRNVSE AYNFPVEGDS KESLGLPGRV FLGKLPESTP 240 DVRFFRSDEY PRKSYAKQYN IRGSLAVPVL ERGTGNCLGV VEVITTSQYI NYRPELETIC 300 KALEAVDLRS SQHFCPPSVK ACKEFCQAAV PEISEILGSV CKTHKLPLAL TWARCFQQGK 360 GGCRHFDENF AHSISTVDSA CFVADTEFLA FHAACSEQYL FLGQGIVGKA FMMNKQCFAT 420 DITSFSKTDY PLSHHAKVLD LHAAVAIPLR STYAGSADFV LELFLPKDCR DGEEQKRIWD 480 LLPIAIQQSC KSLHVVMDKE QEEDIRWQMA VNSNGRYNKQ ENHNFASSSL QQHYPESSSW 540 ITQMMEAQQK GKSVCVSWDT ENKPKQEFKV ATNYDDTPED LYSKQVFAES GQLHQNSGNK 600 NSIEVSKNSS FAGQHSSGSK KGGEKRRTKA EKTISLQVLR QYFAGSLKDA AKSIGVCPTT 660 LKRICRQHGI TRWPSRKLKK VGHSLKKLQL VIDSVQGAEG TIQIDSFYST FPELTSPNFR 720 ENGPSASLKT NDNLKPLNPW PDSGLSNGGV TASKSPSSSC SRSSGSSICC STGEKKHKIP 780 DNVVNTGDAI AVEDPSSILK RTRSDAELHA LYREEEHKPL ARSQSHKNIG RSSSKSNRVP 840 TSLPKKQLQK FSGLAVHLEL KPNFGEDKSE IQLATQLELT RTCNRNWQNV SIEMIYAELI

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence Send to blast

MDDGAFNPNS RPRTFSGTAM DLDFIDELLD DGCWLETTDG FNFLQPGLSN SGVPSDPSQY  60
SPYLESSSSL ASTNLHQVIH QEAAENNLPG NPPCNNTRGK ELTESESQNQ SSLKITSSLV  120
QPEPSPIEGS ELGTRLWIAP MAGVQSSSSV KQRLIHAIGK LKECAKDMEV LVQIWVPTKK  180
EGKCVLTTIG QPSFHSLKNE SLASYRNVSE AYNFPVEGDS KESLGLPGRV FLGKLPESTP  240
DVRFFRSDEY PRKSYAKQYN IRGSLAVPVL ERGTGNCLGV VEVITTSQYI NYRPELETIC  300
KALEAVDLRS SQHFCPPSVK ACKEFCQAAV PEISEILGSV CKTHKLPLAL TWARCFQQGK  360
GGCRHFDENF AHSISTVDSA CFVADTEFLA FHAACSEQYL FLGQGIVGKA FMMNKQCFAT  420
DITSFSKTDY PLSHHAKVLD LHAAVAIPLR STYAGSADFV LELFLPKDCR DGEEQKRIWD  480
LLPIAIQQSC KSLHVVMDKE QEEDIRWQMA VNSNGRYNKQ ENHNFASSSL QQHYPESSSW  540
ITQMMEAQQK GKSVCVSWDT ENKPKQEFKV ATNYDDTPED LYSKQVFAES GQLHQNSGNK  600
NSIEVSKNSS FAGQHSSGSK KGGEKRRTKA EKTISLQVLR QYFAGSLKDA AKSIGVCPTT  660
LKRICRQHGI TRWPSRKLKK VGHSLKKLQL VIDSVQGAEG TIQIDSFYST FPELTSPNFR  720
ENGPSASLKT NDNLKPLNPW PDSGLSNGGV TASKSPSSSC SRSSGSSICC STGEKKHKIP  780
DNVVNTGDAI AVEDPSSILK RTRSDAELHA LYREEEHKPL ARSQSHKNIG RSSSKSNRVP  840
TSLPKKQLQK FSGLAVHLEL KPNFGEDKSE IQLATQLELT RTCNRNWQNV SIEMIYAELI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012067164.1	0.0	protein NLP2
Refseq	XP_012067165.1	0.0	protein NLP2
TrEMBL	A0A067L0N8	0.0	A0A067L0N8_JATCU; Uncharacterized protein
STRING	cassava4.1_001199m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein