PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S07197.20
Common NameJCGZ_21694
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 406aa    MW: 45580.6 Da    PI: 8.8713
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S07197.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.2e-1268124155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a++k++g
  Jcr4S07197.20  68 SRFRGVSRHRWTGRYEAHLWDkGSWNAtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 124
                    789******************99889996635555.********************98 PP
2AP250.74.6e-16167218155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Jcr4S07197.20 167 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 218
                    89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-868124IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1468134IPR016177DNA-binding domain
CDDcd000186.89E-1768134No hitNo description
PROSITE profilePS5103218.29469132IPR001471AP2/ERF domain
SMARTSM003801.4E-1769138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1169133IPR001471AP2/ERF domain
PRINTSPR003673.0E-57081IPR001471AP2/ERF domain
PfamPF008471.3E-11167218IPR001471AP2/ERF domain
CDDcd000181.37E-23167228No hitNo description
SuperFamilySSF541711.44E-17167228IPR016177DNA-binding domain
PROSITE profilePS5103218.676168226IPR001471AP2/ERF domain
SMARTSM003802.5E-25168232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18168227IPR001471AP2/ERF domain
PRINTSPR003673.0E-5208228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEMASGNSEA GKRNALCLVE SEGIETKCVK RRRRDVSVAA LSSNDQEKGN QNIQTSSTAT  60
ATTVKRSSRF RGVSRHRWTG RYEAHLWDKG SWNATQRKKG KQGAYDEEES AARAYDLAAL  120
KYWGRSTFTN FPVSDYEKEI EIMKNVTKEE YLASLRRRSS GFSRGVSKYR GVARHHHNGR  180
WEARIGRVFG NKYLYLGTYS TQEEAAHAYD IAAIEYRGIN AVTNFDLSTY IRWLRPGAHS  240
SANAIVQEPK STIDSLTIPT FSNHINPTDK IIQQQLPLFQ SNNSPYSMEE LNGTFKESDI  300
FKTNTPITIS PCTVSSAPSS SSSSPTALSL LLKSSMFKEL VEKNLNSAAD FDDNEEKVFS  360
ENREIIYNGT SQIPYMYPSN GDALPGLESQ EENTLPLYNR TGQSMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020541300.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A067JER00.0A0A067JER0_JATCU; Uncharacterized protein
STRINGcassava4.1_029670m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-77AP2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]