PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S06752.20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 783aa MW: 88911.4 Da PI: 7.5562

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S06752.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.3	5.3e-18	80	166	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY ++A++ GF v k++ k nge + +tf C + gk++++ k+ ++++r+++r gC a++ + +gkw+v+k++l+H+Hel p Jcr4S06752.20 80 EFYWKFAEKEGFGVIKQSCGKG-LNGELKYQTFSCDRAGKASNNGKN---RQKPRPTKRNGCSARVCASIGPNGKWKVNKVVLQHTHELIP 166 6**************99997.9999*************999...999*********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-15	80	166	IPR004330	FAR1 DNA binding domain
CDD	cd07414	0	363	775	No hit	No description
Pfam	PF16891	1.1E-19	364	413	IPR031675	Serine-threonine protein phosphatase, N-terminal
Gene3D	G3DSA:3.60.21.10	7.6E-8	373	419	IPR029052	Metallo-dependent phosphatase-like
SMART	SM00156	5.9E-151	511	777	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
Gene3D	G3DSA:3.60.21.10	1.6E-128	526	781	IPR029052	Metallo-dependent phosphatase-like
SuperFamily	SSF56300	2.47E-106	534	779	IPR029052	Metallo-dependent phosphatase-like
PRINTS	PR00114	4.7E-92	535	562	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
Pfam	PF00149	1.6E-38	540	726	IPR004843	Calcineurin-like phosphoesterase domain, apaH type
PRINTS	PR00114	4.7E-92	564	591	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTS	PR00114	4.7E-92	597	621	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PROSITE pattern	PS00125	0	598	603	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTS	PR00114	4.7E-92	631	657	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTS	PR00114	4.7E-92	660	687	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTS	PR00114	4.7E-92	717	737	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTS	PR00114	4.7E-92	739	755	IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016787	Molecular Function	hydrolase activity

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence Send to blast
MSYGVVNGNS HNKGADATIS FHESHLEPNG KEMDSAQSVE VSSEDLGPNT QQSQRDENTA 60 DKGDVPKVGM AFGTLEDLFE FYWKFAEKEG FGVIKQSCGK GLNGELKYQT FSCDRAGKAS 120 NNGKNRQKPR PTKRNGCSAR VCASIGPNGK WKVNKVVLQH THELIPYSSQ LLRHHRVIAQ 180 HRKRNLEIND VACIQPCKSA RATEVGAHDN MTSSSKDSRN HIEISRRINL ISSRKGAVNT 240 LLLQQCEFIQ LRELLPQFHQ APSDSKGVRD GDDAKVLPSP DAYKKLYEDR TCLLNMLRNE 300 LEQEKPTTND PLVSWWQGDM NSTLVILGVN KLRGRPYFDL AFGVELDRFS MAQQGQVSID 360 PAVLDDIITR LLDFRQTRAA KQQQVQLTEN EIRQLCLVSR EIFLQQPNLL ELEAPIKICV 420 IEGVLFVFGS TIQNFVYTVA IDVKNGRWIN GSRIKEYANA MVRVLDCSLQ AVDFKLVSSY 480 LIQKCKGKML NAEIRSNLSY SNHLEVFLFL VSWQGLITWK LVLERRRWTM EITLRKEISG 540 DIHGQYSDLL RLFEYGGFPP SANYLFLGDY VDRGKQSLET ICLLLAYKIK YPENFFLLRG 600 NHESASINRI YGFYDECKRR FNVRLWKTFT DCFNCLPVAA LIDDKILCMH GGLSPELTSL 660 DQIRRLTRPT DVPDSGLLCD LLWSDPSRDV KGWGMNDRGV SYTFGPDKVS EFLTNNDMDL 720 VCRAHQVVED GYEFFADRQL VTIFSAPNYC GEFDNAGAMM SVDETLMCSF QILKPADRKS 780 KFM

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence Send to blast

MSYGVVNGNS HNKGADATIS FHESHLEPNG KEMDSAQSVE VSSEDLGPNT QQSQRDENTA  60
DKGDVPKVGM AFGTLEDLFE FYWKFAEKEG FGVIKQSCGK GLNGELKYQT FSCDRAGKAS  120
NNGKNRQKPR PTKRNGCSAR VCASIGPNGK WKVNKVVLQH THELIPYSSQ LLRHHRVIAQ  180
HRKRNLEIND VACIQPCKSA RATEVGAHDN MTSSSKDSRN HIEISRRINL ISSRKGAVNT  240
LLLQQCEFIQ LRELLPQFHQ APSDSKGVRD GDDAKVLPSP DAYKKLYEDR TCLLNMLRNE  300
LEQEKPTTND PLVSWWQGDM NSTLVILGVN KLRGRPYFDL AFGVELDRFS MAQQGQVSID  360
PAVLDDIITR LLDFRQTRAA KQQQVQLTEN EIRQLCLVSR EIFLQQPNLL ELEAPIKICV  420
IEGVLFVFGS TIQNFVYTVA IDVKNGRWIN GSRIKEYANA MVRVLDCSLQ AVDFKLVSSY  480
LIQKCKGKML NAEIRSNLSY SNHLEVFLFL VSWQGLITWK LVLERRRWTM EITLRKEISG  540
DIHGQYSDLL RLFEYGGFPP SANYLFLGDY VDRGKQSLET ICLLLAYKIK YPENFFLLRG  600
NHESASINRI YGFYDECKRR FNVRLWKTFT DCFNCLPVAA LIDDKILCMH GGLSPELTSL  660
DQIRRLTRPT DVPDSGLLCD LLWSDPSRDV KGWGMNDRGV SYTFGPDKVS EFLTNNDMDL  720
VCRAHQVVED GYEFFADRQL VTIFSAPNYC GEFDNAGAMM SVDETLMCSF QILKPADRKS  780
KFM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1s70_A	1e-156	530	782	55	307	Serine/threonine protein phosphatase PP1-beta (or delta) catalytic subunit
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5XWJ9	0.0	A0A2P5XWJ9_GOSBA; Serine/threonine-protein phosphatase
TrEMBL	M1C5B7	0.0	M1C5B7_SOLTU; Serine/threonine-protein phosphatase
STRING	PGSC0003DMT400060162	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	6e-12	FAR1-related sequence 4