PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06532.10
Common NameJCGZ_25264, LOC105629209
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 362aa    MW: 41521.1 Da    PI: 9.879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06532.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-182570147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
    Jcr4S06532.10 25 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 70
                     899*****************************.***********996 PP
2Myb_DNA-binding58.71.3e-1877120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
    Jcr4S06532.10  77 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 120
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.8262071IPR017930Myb domain
SuperFamilySSF466891.54E-2923118IPR009057Homeodomain-like
SMARTSM007178.4E-152473IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-272678IPR009057Homeodomain-like
CDDcd001671.52E-132869No hitNo description
PfamPF139212.2E-172888No hitNo description
PROSITE profilePS5129427.92472126IPR017930Myb domain
SMARTSM007174.9E-1676124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2179125IPR009057Homeodomain-like
CDDcd001672.14E-788119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDHQEPPGAS NSSDDAKNSA ASCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG  60
KSCRLRWFNQ LDPRINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV  120
IMARKQREQA KISGKRSYHH QENLIISHDS KSTKPNDHHH FNNPRKARSH QEHHLFSSRI  180
GFENSKILEF QNPSTDRLFS VIPSSTATSS SPSWIFAPSN NSSPSWIFAP SNNSSPSVVL  240
DHHLPLPRKE KRDYCFSSSR FNYPSESSTI YRNNCRTFFG IPSYRRIVPS PFGYLKIGDE  300
DEDINNGISK KEMMSYSGNS SSFTLKNNMR MMSSQAEERG EESIRHNKEV PFIDFLGVGI  360
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30251257107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346300.0KM034630.1 Jatropha curcas clone JcMYB009 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066143.10.0transcription factor LAF1
TrEMBLA0A067L7520.0A0A067L752_JATCU; MYB family protein
STRINGcassava4.1_034025m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-61myb domain protein 52
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]