PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S06476.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 235aa MW: 27478.7 Da PI: 9.5735 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.5 | 5.5e-16 | 4 | 46 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+ +s r tf kR++ +lKK +E S+LC++e+++iif++++k Jcr4S06476.10 4 IKKESTRIHTFQKRKKSLLKKVSEFSILCGVEACLIIFGPKQK 46 8899999*********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-6 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.09E-16 | 1 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.946 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.47E-17 | 1 | 84 | No hit | No description |
Pfam | PF00319 | 5.4E-16 | 4 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-5 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-5 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MELIKKESTR IHTFQKRKKS LLKKVSEFSI LCGVEACLII FGPKQKNLEK EKLEAHWPSN 60 SDEVKHIINR YKKTKRARCY HISDYFLDKK KKVDIEISKL LKQIYQAKYP SWSIHLDSFV 120 EDQLRILLAQ LDKKLEPGQS SVMIPEKNNN LQLFSEYHKA MMTGHLTGKN DTDNNLGNLQ 180 MKLFNQELME DRMRNMSNDQ NVSNQFGGSL ISNIPSSSGL PYVNPSCWMW DNEMY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012072699.2 | 1e-137 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A067LN79 | 1e-136 | A0A067LN79_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_025079m | 4e-70 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 1e-21 | AGAMOUS-like 82 |