PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S06471.20 | ||||||||
Common Name | JCGZ_26464, LOC105646441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29390.8 Da PI: 6.8644 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l +v+++G +W+ ++ g+ R++k+c++rw +yl Jcr4S06471.20 14 KGAWSQEEDDKLRAYVQRYGHWNWRELPKFAGLSRCGKSCRLRWINYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.7e-17 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ ++eE++l++++++q+G++ W++Ia++++ gRt++++k++w+++l Jcr4S06471.20 68 GNYSKEEEDLIIRLHEQFGNK-WSKIAAKLP-GRTDNEIKNYWHSHL 112 789******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-22 | 8 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.958 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.533 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-16 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.74E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVRAPFFDKN GLKKGAWSQE EDDKLRAYVQ RYGHWNWREL PKFAGLSRCG KSCRLRWINY 60 LRPGVKHGNY SKEEEDLIIR LHEQFGNKWS KIAAKLPGRT DNEIKNYWHS HLKRRAKKSE 120 SSNGMKEQCS TETLCEVSQT RNLKIESYIA KTPYSHPILE SYPLSAEPSS SEVSHLSSAD 180 SCLVTASATS CNVEDRVSYS FETFEDTSGD FWTQPFVADQ DGYILSVLDG GFTSPSFTSY 240 DDSVDLFYQV MKELSGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034707 | 0.0 | KM034707.1 Jatropha curcas clone JcMYB087 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087685.1 | 0.0 | myb-related protein Myb4 | ||||
TrEMBL | A0A067JXL7 | 0.0 | A0A067JXL7_JATCU; MYB family protein | ||||
STRING | cassava4.1_014242m | 1e-124 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 1e-56 | myb domain protein 58 |
Link Out ? help Back to Top | |
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Entrez Gene | 105646441 |
Publications ? help Back to Top | |||
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