PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S06414.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GATA | ||||||||
Protein Properties | Length: 210aa MW: 22925 Da PI: 10.2866 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.9 | 1.2e-17 | 161 | 196 | 1 | 34 |
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ nC+t +Tp+WR+gp g+k+LCnaCG++y+k++ Jcr4S06414.10 161 CTnyNCNTNDTPMWRKGPLGPKSLCNACGIKYQKEE 196 55559****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.28E-11 | 156 | 201 | No hit | No description |
SMART | SM00401 | 1.1E-11 | 157 | 209 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.8E-13 | 160 | 200 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.6E-15 | 161 | 196 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.98E-8 | 165 | 194 | No hit | No description |
PROSITE profile | PS50114 | 10.91 | 165 | 199 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
ATNNYGIGGG RAATNNYGIG GGQAAINHYG MINRMGNVGM GNIGSNLLGG QNLNSWAYDM 60 GSSSTDGILR HHQQYATGIP AYQNINGGLT LPPFQPHSLT SYTLLDCSPF KARQTGKXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXVARRPR NGNNINPHRR CTNYNCNTND TPMWRKGPLG 180 PKSLCNACGI KYQKEEGKRK AKEAAKDSKA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012093241.1 | 1e-124 | GATA zinc finger domain-containing protein 7 | ||||
Refseq | XP_012093243.1 | 1e-124 | GATA zinc finger domain-containing protein 7 | ||||
TrEMBL | A0A067LB10 | 1e-122 | A0A067LB10_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13778 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 5e-15 | GATA transcription factor 29 |