PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06347.20
Common NameGRAS03, JCGZ_02981, LOC105629957
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 614aa    MW: 68962.5 Da    PI: 5.0106
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06347.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS101.71e-313674841121
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL+ cA+avs++d + a++lL+++++++sp gd  qRla++f+++L+arla++++++y al++++ s    ++ l+a++++  v+P+ k++ +
  Jcr4S06347.20 367 LRTLLILCAQAVSANDRRTANELLKQIRQHSSPFGDGSQRLAHCFANGLEARLAGTGTQIYTALSSEKVS---AADMLKAYHAYISVCPFKKIAII 459
                    5789************************************************************999998...99********************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisq 121
                     aN+ Il a+e++ ++HiiDf+i+ 
  Jcr4S06347.20 460 FANHNILAAAEEAMTLHIIDFGIEL 484
                    **********************975 PP
2GRAS306.7e-10482538147202
           GRAS 147 vgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                    ++ p+sg   +e+++etg+rLak++e+ +vpfe+n+ +ak++e++++++L++++gE +
  Jcr4S06347.20 482 IELPQSGfrPAERVQETGRRLAKYCERHNVPFEYNA-IAKKWETIKIDDLKINHGERV 538
                    666777777899************************.7******************87 PP
3GRAS44.82e-14542611304373
           GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    + +er et+++W+ r ++aG+k++pl+ +++k+ k+ ++  + + + v+++  ++++gWk+r L++ SaW
  Jcr4S06347.20 542 KGVERPETYKQWQIRNMRAGLKQLPLDPQVMKKLKCKVNSRYHEDFVVDQDGRWMLQGWKGRILYASSAW 611
                    4579**************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.613341614IPR005202Transcription factor GRAS
PfamPF035143.6E-29367484IPR005202Transcription factor GRAS
PfamPF035147.0E-12542611IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MGTDSRFDGF SGFEFENQIV FPDSDQYEDS TNSTNGFNFK DTCFHTDFNF VERSLVLPDP  60
DPGNPASLSS ITTMDGDSPS DDNDFSETVL NYISQMLMEE DMEQKPCMFQ DPLALQAAEK  120
SLYDVLGEQS LSSPNQCSYG DQFLLNNNGM VNLGEFKPPF MQMHLPTDFV FQSTAKSSSE  180
ESLKLQDGLA SNGSDMMGSS VGKIIVPNMF GEGELALQFQ KGVEEANRFL PKGNQLLIDL  240
EVNVSKPELK ENSTKVVVKS EKEESENLLN LIKVKKNHER EDEDFQEERS NKQSAVYVDE  300
GELAEMFDKV LVCTEEKCGP PQCMLNDSSE SKTSKTLSQN GQTNRSNSNG GRTRAKRQGN  360
SNEVVDLRTL LILCAQAVSA NDRRTANELL KQIRQHSSPF GDGSQRLAHC FANGLEARLA  420
GTGTQIYTAL SSEKVSAADM LKAYHAYISV CPFKKIAIIF ANHNILAAAE EAMTLHIIDF  480
GIELPQSGFR PAERVQETGR RLAKYCERHN VPFEYNAIAK KWETIKIDDL KINHGERVKA  540
RKGVERPETY KQWQIRNMRA GLKQLPLDPQ VMKKLKCKVN SRYHEDFVVD QDGRWMLQGW  600
KGRILYASSA WIPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-183505381214Protein SCARECROW
5b3h_D7e-183505381214Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052600.0KM405260.1 Jatropha curcas GRAS03 protein (GRAS03) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067010.10.0scarecrow-like protein 14
RefseqXP_012067011.10.0scarecrow-like protein 14
RefseqXP_012067012.10.0scarecrow-like protein 14
SwissprotQ9XE581e-155SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A067L1C80.0A0A067L1C8_JATCU; GRAS03 protein
STRINGcassava4.1_002197m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-152SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]