PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S06306.70 | ||||||||
Common Name | JCGZ_24763, LOC105631454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 27679 Da PI: 4.9822 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.2 | 4.3e-41 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am+++++++++ra+dPv G++++i++lq+q+e +kael+l Jcr4S06306.70 13 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLNQPEKDEAMRTIIFQSDVRANDPVGGCYRIIRELQRQIEYHKAELDL 108 7*********************************************************************************************99 PP DUF260 97 lkee 100 + ++ Jcr4S06306.70 109 VLHQ 112 8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.038 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.0E-38 | 13 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSIPRIGNGT TQACAACKYQ RRKCAPDCIL APYFPHDRQR QFLNAHKLFG VSNITKIIKN 60 LNQPEKDEAM RTIIFQSDVR ANDPVGGCYR IIRELQRQIE YHKAELDLVL HQLAICRAQQ 120 QNHFQILDGD DSTNLSGCDI VNADSLDIYD PVIQYHEFPQ DQQDQEYNNV VQENNQENVN 180 ALGIHHQGST CSPSSLHLNN EQPFVDECDD MKRLLDINDV KFEPEDLVER KFVPSAQLVI 240 SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-27 | 9 | 107 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-27 | 9 | 107 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068972.1 | 1e-180 | LOB domain-containing protein 22 | ||||
Swissprot | Q9LRW1 | 9e-67 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A067L9L1 | 1e-179 | A0A067L9L1_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_028597m | 1e-126 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-64 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Entrez Gene | 105631454 |
Publications ? help Back to Top | |||
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