PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S06283.20 | ||||||||
Common Name | JCGZ_18434 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 177aa MW: 19405.2 Da PI: 9.1386 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Jcr4S06283.20 34 FECKTCNRQFPSFQALGGHRASH 56 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.62E-9 | 32 | 108 | No hit | No description |
Pfam | PF13912 | 2.9E-13 | 33 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 34 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 34 | 56 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 36 | 56 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.2E-10 | 85 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.912 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MANCLMLLSQ GKETRFPSFE AMKDTGLNSP GRVFECKTCN RQFPSFQALG GHRASHKKPR 60 LMGGDGSLEN QTSSLSSSSP VKPKTHECSI CGLEFAIGQA LGGHMRRHRA ALSNNNHNNG 120 DDSAEEKVMV PPPILKKSNS KRVLCLDLNL TPYENDLEFF RLVGKEAPMV LTVSSRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020537954.1 | 1e-129 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A067KDD3 | 1e-128 | A0A067KDD3_JATCU; Uncharacterized protein | ||||
STRING | XP_002528469.1 | 8e-78 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 1e-37 | C2H2 family protein |
Publications ? help Back to Top | |||
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