PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S06273.30 | ||||||||
Common Name | JCGZ_03517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 301aa MW: 32978.2 Da PI: 7.7241 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 28.9 | 3.2e-09 | 76 | 125 | 1 | 50 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +Caa k+lrr C+++C a yfp + +++ v + G snv ++k+ + Jcr4S06273.30 76 SCAARKILRRPCNDKCYSASYFPPSAESHNFTVDSVLGLSNVEFFMKEGR 125 6*********************99998888899**********9999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.7E-7 | 76 | 125 | IPR004883 | Lateral organ boundaries, LOB |
SMART | SM00439 | 6.1E-22 | 125 | 238 | IPR001025 | Bromo adjacent homology (BAH) domain |
PROSITE profile | PS51038 | 17.213 | 125 | 238 | IPR001025 | Bromo adjacent homology (BAH) domain |
Pfam | PF01426 | 1.2E-8 | 126 | 235 | IPR001025 | Bromo adjacent homology (BAH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MAKNPFVFPS TFSDSQSPRQ SSSSSPSLSF DSYSSSSSDP SVNSPFLSSH HQSLSLQPSQ 60 TSSSRSGLPS AAFLGSCAAR KILRRPCNDK CYSASYFPPS AESHNFTVDS VLGLSNVEFF 120 MKEGRKISVG DCAVFKPPQD SPPFVGIIRS LIVGEVLKLC VNWLYRPAEV KLRKGIPLEA 180 APNEVFYSFH KDEIPAASLL HPCKVSFLPK GVELPSGICS FVCRRVYDIQ YKCFFWLTDQ 240 DNINERQEEV DQLLYKTRIE MHSSVEPAGH SPKPVNGSTS TSQLKLGSDD VHSGASSFAS 300 I |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020534283.1 | 0.0 | uncharacterized protein LOC110009289 isoform X1 | ||||
TrEMBL | A0A067KUT9 | 0.0 | A0A067KUT9_JATCU; Uncharacterized protein | ||||
STRING | Gorai.008G297300.1 | 2e-94 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-07 | LOB domain-containing protein 11 |
Publications ? help Back to Top | |||
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