PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06273.30
Common NameJCGZ_03517
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LBD
Protein Properties Length: 301aa    MW: 32978.2 Da    PI: 7.7241
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06273.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26028.93.2e-0976125150
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 
                    +Caa k+lrr C+++C  a yfp + +++   v  + G snv  ++k+ +
  Jcr4S06273.30  76 SCAARKILRRPCNDKCYSASYFPPSAESHNFTVDSVLGLSNVEFFMKEGR 125
                    6*********************99998888899**********9999865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.7E-776125IPR004883Lateral organ boundaries, LOB
SMARTSM004396.1E-22125238IPR001025Bromo adjacent homology (BAH) domain
PROSITE profilePS5103817.213125238IPR001025Bromo adjacent homology (BAH) domain
PfamPF014261.2E-8126235IPR001025Bromo adjacent homology (BAH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAKNPFVFPS TFSDSQSPRQ SSSSSPSLSF DSYSSSSSDP SVNSPFLSSH HQSLSLQPSQ  60
TSSSRSGLPS AAFLGSCAAR KILRRPCNDK CYSASYFPPS AESHNFTVDS VLGLSNVEFF  120
MKEGRKISVG DCAVFKPPQD SPPFVGIIRS LIVGEVLKLC VNWLYRPAEV KLRKGIPLEA  180
APNEVFYSFH KDEIPAASLL HPCKVSFLPK GVELPSGICS FVCRRVYDIQ YKCFFWLTDQ  240
DNINERQEEV DQLLYKTRIE MHSSVEPAGH SPKPVNGSTS TSQLKLGSDD VHSGASSFAS  300
I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534283.10.0uncharacterized protein LOC110009289 isoform X1
TrEMBLA0A067KUT90.0A0A067KUT9_JATCU; Uncharacterized protein
STRINGGorai.008G297300.12e-94(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-07LOB domain-containing protein 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]