PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06164.20
Common NameJCGZ_17405, LOC105639689
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 659aa    MW: 72736.7 Da    PI: 6.8901
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06164.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.2e-203086157
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                   +++ +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++kk
  Jcr4S06164.20 30 KKRYHRHTANQIQQLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKK 86
                   678899*************************************************97 PP
2START1749.2e-551743952206
                    HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                    +a  a++el+++ + +ep W ks+    ++++ d++  +f++  +       ++ea+r+sgvv+m++  lv  ++d + +W e ++      +tle
  Jcr4S06164.20 174 IAANALEELLRLLQTDEPSWIKSPsdsrDILDLDTYQNIFPRPISrlknpnVRIEASRDSGVVIMNSLALVDMFMDAN-KWVELFPtivsMSKTLE 268
                    577899**********************9***********998889999999**************************.******99998999*** PP

                    EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
          START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                    vissg      galqlm+ elq+lsplv  R+f+++Ry++q ++g w+iv vS d +q+ ++      +++lpSg+li++++ng+skvtwvehv+ 
  Jcr4S06164.20 269 VISSGmlgshsGALQLMYEELQVLSPLVQtREFYILRYCQQIEQGLWAIVNVSYDIPQFASQ----CSSHRLPSGCLIQDMPNGYSKVTWVEHVEI 360
                    ***********************************************************994....45566************************* PP

                    -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                    ++++p h l+r l+ sg+a+ga +w+atlqr ce+
  Jcr4S06164.20 361 EDKTPtHRLYRDLIYSGMAFGAERWLATLQRMCER 395
                    *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.88E-211287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-221481IPR009057Homeodomain-like
PROSITE profilePS5007118.2852787IPR001356Homeobox domain
SMARTSM003891.0E-192891IPR001356Homeobox domain
CDDcd000863.62E-192986No hitNo description
PfamPF000466.0E-183086IPR001356Homeobox domain
PROSITE patternPS0002706285IPR017970Homeobox, conserved site
PROSITE profilePS5084853.125164398IPR002913START domain
SuperFamilySSF559611.47E-38165396No hitNo description
CDDcd088752.44E-117168394No hitNo description
SMARTSM002343.3E-47173395IPR002913START domain
PfamPF018526.2E-47174395IPR002913START domain
Gene3DG3DSA:3.30.530.202.6E-7176365IPR023393START-like domain
SuperFamilySSF559611.51E-23416651No hitNo description
Gene3DG3DSA:3.30.530.201.4E-4424502IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MEYGSGGGGD GGAGSPSGGD HDLSESQRRK KRYHRHTANQ IQQLEAMFKE CPHPDEKQRL  60
QLSRELGLAP RQIKFWFQNR RTQMKKLRIE NAQLKEELDR VSSIAAKYIG RPISHLPPVQ  120
PIHMSSLDLS MASFSGPSLD LDLDLIPSSF SSSSLPFHHP LGISDMDKSL MTDIAANALE  180
ELLRLLQTDE PSWIKSPSDS RDILDLDTYQ NIFPRPISRL KNPNVRIEAS RDSGVVIMNS  240
LALVDMFMDA NKWVELFPTI VSMSKTLEVI SSGMLGSHSG ALQLMYEELQ VLSPLVQTRE  300
FYILRYCQQI EQGLWAIVNV SYDIPQFASQ CSSHRLPSGC LIQDMPNGYS KVTWVEHVEI  360
EDKTPTHRLY RDLIYSGMAF GAERWLATLQ RMCERFACLM VSGTSTRDLG GVIPSPDGKR  420
SMMKLAQRMV NSFCASISTS NRHRWTTVSG SNEVGVRVHK STDPGQPNGV VLNAATTFWL  480
PVSPQNVFNF FKDERTRAQW DVLSSGNAVQ EVAHIANGSH PGNCISVLRA FNTGQNNMLI  540
LQESCIDSSG SLVVYCPVDL PAINIAMSGE DPSYIPLLPS GFTISPDGRL DHGDGASTSS  600
STHVSMGRRS SGSLITVSFQ ILVSSLPSAK LNLESVTTVN NLISTTIQQI KAAMNCPSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079215.10.0homeobox-leucine zipper protein HDG11
RefseqXP_020537607.10.0homeobox-leucine zipper protein HDG11
RefseqXP_020537610.10.0homeobox-leucine zipper protein HDG11
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A067LF100.0A0A067LF10_JATCU; Uncharacterized protein
STRINGXP_002527933.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  5. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  6. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  7. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  8. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  9. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  10. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  11. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]