PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S06081.50
Common NameJCGZ_11737, LOC105640641
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TCP
Protein Properties Length: 344aa    MW: 38567.5 Da    PI: 8.7781
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S06081.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.79.2e-30411573112
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec.eaesssssasns 85 
                    g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WL+ + k  i++l+ +            +      +  ++ s ++++n+
  Jcr4S06081.50  41 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLIDATKNDIDKLPPLhlpqgfgyqfhqQ------MlLSNGSTNNNNND 130
                    79*************************************************************6666664422220......23222222233333 PP

            TCP  86 ssgkaaksaakskksqksaasalnlak 112
                    ++g++ ++++ + k  + +as  n+a+
  Jcr4S06081.50 131 NHGNQDQDSTAKFKYWEAEASLKNIAH 157
                    333333333322222222223344443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-2742138IPR005333Transcription factor, TCP
PROSITE profilePS5136928.98342100IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MTTKQEGDGN ENKFPNAAAS SSREWSAFRN PRIVRVSRSF GGKDRHSKVC TIRGLRDRRI  60
RLSVPTAIQL YDLQDRLGLS QPSKVIDWLI DATKNDIDKL PPLHLPQGFG YQFHQQMLLS  120
NGSTNNNNND NHGNQDQDST AKFKYWEAEA SLKNIAHQEK GKWIRTNDQD GGFNCNSAQN  180
LFPLTSNHSS LPNLLSNPLP YYHWDASNLS LSQFGPHHGF LPQSSSETSL NSNTNNNPTV  240
PLPSSLAFSS NNAPTSHQFF FCPPATMSSL FPQYPPYSIT PLENEWRDIN HFQLLNPSGS  300
QHMALPTSRG ISSPKKNFSL NVNHGFAHAY STNNNERQSV DKDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1947101155Putative transcription factor PCF6
5zkt_B2e-1947101155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080397.10.0transcription factor TCP5
TrEMBLA0A067K5560.0A0A067K556_JATCU; Uncharacterized protein
STRINGXP_002514641.11e-124(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-51TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]